Variant report

Variant	rs12520952
Chromosome Location	chr5:35834678-35834679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35816242..35818353-chr5:35834652..35837351,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10043573	0.84[EUR][1000 genomes]
rs10053847	0.90[EUR][1000 genomes]
rs10058680	0.93[EUR][1000 genomes]
rs1073290	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11567722	0.93[EUR][1000 genomes]
rs11567738	0.90[EUR][1000 genomes]
rs11567754	0.90[EUR][1000 genomes]
rs11567761	0.90[EUR][1000 genomes]
rs13167136	0.90[EUR][1000 genomes]
rs13172065	0.84[EUR][1000 genomes]
rs13180666	0.86[ASN][1000 genomes]
rs1389834	0.89[EUR][1000 genomes]
rs1389835	0.89[EUR][1000 genomes]
rs1494559	0.93[EUR][1000 genomes]
rs16899999	0.84[EUR][1000 genomes]
rs1862632	0.90[EUR][1000 genomes]
rs2228141	0.90[EUR][1000 genomes]
rs34496007	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35467464	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35588638	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3822731	0.90[EUR][1000 genomes]
rs4521502	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4601063	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4869492	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66570838	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888699	0.84[EUR][1000 genomes]
rs6891095	0.93[EUR][1000 genomes]
rs6892488	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7718489	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7718919	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9292618	0.90[EUR][1000 genomes]
rs969128	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr5:35824400-35835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:35830600-35837600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr5:35831000-35835200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr5:35831000-35839200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:35832000-35834800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:35832000-35836400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:35832000-35839000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:35833200-35836000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr5:35833200-35839000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr5:35833400-35835000	Enhancers	Fetal Thymus	thymus
12	chr5:35833400-35836600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:35833800-35836000	Enhancers	Primary T cells from cord blood	blood
14	chr5:35834000-35835400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr5:35834200-35835800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:35834600-35835200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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