Variant report

Variant	rs745890
Chromosome Location	chr4:86744607-86744608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr4:86744390-86744710	Hela-S3	cervix:	n/a	n/a
2	MXI1	chr4:86744487-86745055	SK-N-SH	brain:	n/a	chr4:86744773-86744782
3	CEBPB	chr4:86744347-86744732	IMR90	lung:	n/a	chr4:86744532-86744543
4	MAX	chr4:86744543-86744779	Hela-S3	cervix:	n/a	n/a
5	FOS	chr4:86744361-86744713	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr4:86744592-86744688	MCF10A-Er-Src	breast:	n/a	n/a
7	USF1	chr4:86744585-86744929	H1-hESC	embryonic stem cell:	n/a	n/a
8	FOS	chr4:86744349-86744711	MCF10A-Er-Src	breast:	n/a	n/a
9	CEBPB	chr4:86744382-86744708	HepG2	liver:	n/a	chr4:86744532-86744543
10	CEBPB	chr4:86744453-86744671	H1-hESC	embryonic stem cell:	n/a	chr4:86744532-86744543
11	FOS	chr4:86744400-86744711	MCF10A-Er-Src	breast:	n/a	n/a
12	RCOR1	chr4:86744540-86744856	K562	blood:	n/a	n/a
13	POLR2A	chr4:86744494-86744805	HCT-116	colon:	n/a	n/a
14	CEBPB	chr4:86744394-86744731	Hela-S3	cervix:	n/a	chr4:86744532-86744543
15	GATA2	chr4:86744521-86744929	SH-SY5Y	brain:	n/a	n/a
16	STAT3	chr4:86744591-86744698	MCF10A-Er-Src	breast:	n/a	n/a
17	FOS	chr4:86744349-86744755	MCF10A-Er-Src	breast:	n/a	n/a
18	MAX	chr4:86744402-86744977	HCT-116	colon:	n/a	chr4:86744535-86744544
19	EP300	chr4:86744200-86745193	SK-N-SH	brain:	n/a	n/a
20	JUND	chr4:86744525-86744697	H1-hESC	embryonic stem cell:	n/a	n/a
21	FOSL1	chr4:86744331-86744877	HCT-116	colon:	n/a	n/a
22	SMC3	chr4:86744569-86744735	Hela-S3	cervix:	n/a	n/a
23	MYC	chr4:86744564-86744855	K562	blood:	n/a	n/a
24	MAX	chr4:86744581-86744858	K562	blood:	n/a	n/a
25	EP300	chr4:86744531-86744830	SK-N-SH_RA	brain:	n/a	n/a
26	CEBPB	chr4:86744413-86744712	A549	lung:	n/a	chr4:86744532-86744543
27	CEBPB	chr4:86744230-86744931	HCT-116	colon:	n/a	chr4:86744532-86744543
28	CEBPB	chr4:86744363-86744732	K562	blood:	n/a	chr4:86744532-86744543
29	CEBPB	chr4:86744249-86744989	HCT-116	colon:	n/a	chr4:86744532-86744543

Variant related genes	Relation type
ARHGAP24	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10014188	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029846	0.99[ASN][1000 genomes]
rs345368	0.83[AMR][1000 genomes]
rs6815441	0.82[ASN][1000 genomes]
rs7682945	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86728200-86747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86729400-86747400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:86736200-86748600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
5	chr4:86740200-86744800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:86740200-86745000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:86740200-86747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:86740200-86747200	Weak transcription	Fetal Lung	lung
9	chr4:86740200-86748600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:86740200-86748800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:86741600-86745800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr4:86741800-86747200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:86743000-86746000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:86743200-86745800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:86743200-86748800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:86743400-86745800	Enhancers	Osteobl	bone
17	chr4:86743600-86744800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:86743600-86747200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:86743800-86747200	Weak transcription	Aorta	Aorta
20	chr4:86744200-86746000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:86744200-86748600	Enhancers	Fetal Heart	heart
22	chr4:86744200-86748600	Enhancers	HSMM	muscle
23	chr4:86744400-86744800	Enhancers	Brain Germinal Matrix	brain
24	chr4:86744400-86744800	Enhancers	Fetal Intestine Small	intestine
25	chr4:86744400-86744800	Enhancers	Stomach Smooth Muscle	stomach
26	chr4:86744400-86745600	Flanking Active TSS	HUVEC	blood vessel
27	chr4:86744400-86746000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:86744400-86747000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr4:86744400-86747400	Enhancers	Fetal Kidney	kidney
30	chr4:86744600-86744800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:86744600-86744800	Enhancers	H9 Cell Line	embryonic stem cell
32	chr4:86744600-86744800	Enhancers	Duodenum Mucosa	Duodenum
33	chr4:86744600-86744800	Enhancers	Gastric	stomach
34	chr4:86744600-86744800	Enhancers	Pancreas	Pancrea
35	chr4:86744600-86744800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr4:86744600-86744800	Enhancers	Spleen	Spleen
37	chr4:86744600-86744800	Enhancers	K562	blood
38	chr4:86744600-86744800	Flanking Active TSS	NHDF-Ad	bronchial
39	chr4:86744600-86745000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr4:86744600-86745000	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr4:86744600-86745000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:86744600-86745000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr4:86744600-86745000	Enhancers	Fetal Muscle Leg	muscle
44	chr4:86744600-86745000	Enhancers	Left Ventricle	heart
45	chr4:86744600-86745000	Enhancers	Right Ventricle	heart
46	chr4:86744600-86745000	Enhancers	Small Intestine	intestine
47	chr4:86744600-86745200	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr4:86744600-86745200	Enhancers	NHLF	lung
49	chr4:86744600-86745600	Enhancers	H1 Cell Line	embryonic stem cell
50	chr4:86744600-86745600	Enhancers	Rectal Smooth Muscle	rectum

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