Variant report

Variant	rs7461215
Chromosome Location	chr8:131458713-131458714
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131455101..131457413-chr8:131457483..131461647,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153317	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11775398	0.90[CEU][hapmap];0.83[GIH][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs11778368	0.82[EUR][1000 genomes]
rs11779293	0.88[CHD][hapmap];0.89[TSI][hapmap]
rs11780644	0.83[TSI][hapmap]
rs11784988	0.83[TSI][hapmap]
rs11785806	0.83[TSI][hapmap]
rs4301463	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs61548798	0.91[EUR][1000 genomes]
rs6981708	0.82[EUR][1000 genomes]
rs6997802	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs7011034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726214	0.91[ASN][1000 genomes]
rs72726234	0.82[EUR][1000 genomes]
rs72726236	0.82[EUR][1000 genomes]
rs7461213	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834677	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131456400-131460600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:131456400-131460600	Weak transcription	Ovary	ovary
3	chr8:131456600-131460400	Weak transcription	Placenta	Placenta
4	chr8:131456600-131462200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:131456800-131460200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:131457000-131459000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:131457200-131460600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:131457400-131460800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:131457600-131459200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:131457600-131459600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:131457600-131459800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:131457600-131460400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:131457600-131460600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:131457800-131458800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr8:131457800-131458800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr8:131457800-131459000	Enhancers	GM12878-XiMat	blood
17	chr8:131457800-131459200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr8:131457800-131459200	Enhancers	A549	lung
19	chr8:131457800-131459400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr8:131457800-131459400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr8:131457800-131459600	Enhancers	HMEC	breast
22	chr8:131457800-131460000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:131457800-131460200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:131457800-131460400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:131457800-131460400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr8:131457800-131460600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:131457800-131460600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:131457800-131460800	Weak transcription	Right Atrium	heart
29	chr8:131457800-131460800	Weak transcription	NHLF	lung
30	chr8:131458000-131458800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr8:131458000-131458800	Weak transcription	NHDF-Ad	bronchial
32	chr8:131458000-131459200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr8:131458000-131459200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:131458000-131459600	Enhancers	NHEK	skin
35	chr8:131458000-131459800	Weak transcription	NH-A	brain
36	chr8:131458000-131460200	Weak transcription	Osteobl	bone
37	chr8:131458000-131460600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:131458000-131461800	Weak transcription	Spleen	Spleen
39	chr8:131458000-131463000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:131458000-131464600	Weak transcription	Adipose Nuclei	Adipose
41	chr8:131458200-131458800	Weak transcription	Left Ventricle	heart
42	chr8:131458200-131465600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:131458400-131458800	Bivalent Enhancer	Primary T cells from cord blood	blood
44	chr8:131458400-131459200	Enhancers	Fetal Heart	heart
45	chr8:131458400-131462200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:131458600-131458800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:131458600-131458800	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr8:131458600-131459000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:131458600-131463200	Weak transcription	HUVEC	blood vessel

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