Variant report

Variant	rs61548798
Chromosome Location	chr8:131469236-131469237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11775398	0.82[EUR][1000 genomes]
rs4301463	1.00[ASN][1000 genomes]
rs59710753	1.00[ASN][1000 genomes]
rs6997802	1.00[ASN][1000 genomes]
rs7011034	0.91[EUR][1000 genomes]
rs72726240	0.81[EUR][1000 genomes]
rs72726241	0.81[EUR][1000 genomes]
rs72726244	0.81[EUR][1000 genomes]
rs7461213	0.91[EUR][1000 genomes]
rs7461215	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131461400-131470000	Weak transcription	HMEC	breast
2	chr8:131464800-131470000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:131465400-131486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:131465800-131469800	Weak transcription	Fetal Lung	lung
5	chr8:131466000-131469600	Weak transcription	Fetal Stomach	stomach
6	chr8:131466000-131476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:131466200-131469600	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:131466200-131469800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:131466400-131470000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:131468600-131470400	Enhancers	NHLF	lung
11	chr8:131468800-131469400	Enhancers	Left Ventricle	heart
12	chr8:131468800-131470400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:131468800-131470400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:131469000-131469400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:131469000-131469400	Weak transcription	Brain Germinal Matrix	brain
16	chr8:131469200-131469600	Weak transcription	NHDF-Ad	bronchial
17	chr8:131469200-131470200	Enhancers	NH-A	brain
18	chr8:131469200-131470400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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