Variant report

Variant	rs72726240
Chromosome Location	chr8:131469897-131469898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131454706..131459236-chr8:131468447..131471973,4	MCF-7	breast:
2	chr8:131469282..131471621-chr8:131555231..131557066,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153317	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11774346	0.81[AMR][1000 genomes]
rs11774901	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11775172	0.81[AMR][1000 genomes]
rs11775309	0.87[AMR][1000 genomes]
rs11776732	0.93[AMR][1000 genomes]
rs11776768	0.93[AMR][1000 genomes]
rs11778072	0.81[AMR][1000 genomes]
rs11778368	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11778504	0.81[AMR][1000 genomes]
rs11778593	0.81[AMR][1000 genomes]
rs11778712	0.81[AMR][1000 genomes]
rs11778881	0.81[AMR][1000 genomes]
rs11781211	0.81[AMR][1000 genomes]
rs11783764	0.81[AMR][1000 genomes]
rs11784477	0.81[AMR][1000 genomes]
rs11784842	0.81[AMR][1000 genomes]
rs11785125	0.81[AMR][1000 genomes]
rs11785172	0.81[AMR][1000 genomes]
rs11786205	0.81[AMR][1000 genomes]
rs56162445	0.87[AMR][1000 genomes]
rs56350423	0.93[AMR][1000 genomes]
rs61548798	0.81[EUR][1000 genomes]
rs6981708	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6981861	0.81[AMR][1000 genomes]
rs6982030	0.81[AMR][1000 genomes]
rs6992270	0.81[AMR][1000 genomes]
rs72724414	0.81[AMR][1000 genomes]
rs72724419	0.81[AMR][1000 genomes]
rs72724421	0.81[AMR][1000 genomes]
rs72724423	0.81[AMR][1000 genomes]
rs72724426	0.81[AMR][1000 genomes]
rs72724447	0.81[AMR][1000 genomes]
rs72724449	0.81[AMR][1000 genomes]
rs72724450	0.81[AMR][1000 genomes]
rs72724451	0.81[AMR][1000 genomes]
rs72724452	0.81[AMR][1000 genomes]
rs72724453	0.81[AMR][1000 genomes]
rs72724454	0.81[AMR][1000 genomes]
rs72724455	0.81[AMR][1000 genomes]
rs72724460	0.81[AMR][1000 genomes]
rs72724461	0.81[AMR][1000 genomes]
rs72724473	0.81[AMR][1000 genomes]
rs72724487	0.81[AMR][1000 genomes]
rs72724502	0.81[AMR][1000 genomes]
rs72726203	0.81[AMR][1000 genomes]
rs72726204	0.87[AMR][1000 genomes]
rs72726205	0.87[AMR][1000 genomes]
rs72726216	0.87[AMR][1000 genomes]
rs72726217	0.87[AMR][1000 genomes]
rs72726223	0.87[AMR][1000 genomes]
rs72726225	0.87[AMR][1000 genomes]
rs72726226	0.93[AMR][1000 genomes]
rs72726227	0.93[AMR][1000 genomes]
rs72726229	0.93[AMR][1000 genomes]
rs72726231	0.93[AMR][1000 genomes]
rs72726232	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72726234	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72726236	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72726241	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72726244	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826256	0.81[AMR][1000 genomes]
rs7836273	0.81[AMR][1000 genomes]
rs929990	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131461400-131470000	Weak transcription	HMEC	breast
2	chr8:131464800-131470000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:131465400-131486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:131466000-131476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:131466400-131470000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:131468600-131470400	Enhancers	NHLF	lung
7	chr8:131468800-131470400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:131468800-131470400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:131469200-131470200	Enhancers	NH-A	brain
10	chr8:131469200-131470400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:131469400-131470400	Enhancers	Brain Germinal Matrix	brain
12	chr8:131469400-131470600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr8:131469600-131470200	Enhancers	Fetal Muscle Leg	muscle
14	chr8:131469600-131470400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:131469600-131470400	Enhancers	Fetal Stomach	stomach
16	chr8:131469600-131470400	Enhancers	NHDF-Ad	bronchial
17	chr8:131469600-131470800	Enhancers	GM12878-XiMat	blood
18	chr8:131469800-131470200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:131469800-131470200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:131469800-131470400	Enhancers	Fetal Lung	lung

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