Variant report

Variant	rs72726241
Chromosome Location	chr8:131472003-131472004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131464873..131467806-chr8:131470605..131472782,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11774346	0.87[AMR][1000 genomes]
rs11774901	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11775172	0.87[AMR][1000 genomes]
rs11775309	0.93[AMR][1000 genomes]
rs11776732	1.00[AMR][1000 genomes]
rs11776768	1.00[AMR][1000 genomes]
rs11778072	0.87[AMR][1000 genomes]
rs11778368	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11778504	0.87[AMR][1000 genomes]
rs11778593	0.87[AMR][1000 genomes]
rs11778712	0.87[AMR][1000 genomes]
rs11778881	0.87[AMR][1000 genomes]
rs11781211	0.87[AMR][1000 genomes]
rs11783764	0.87[AMR][1000 genomes]
rs11784477	0.87[AMR][1000 genomes]
rs11784842	0.87[AMR][1000 genomes]
rs11785125	0.87[AMR][1000 genomes]
rs11785172	0.87[AMR][1000 genomes]
rs11786205	0.87[AMR][1000 genomes]
rs56162445	0.93[AMR][1000 genomes]
rs56350423	1.00[AMR][1000 genomes]
rs61548798	0.81[EUR][1000 genomes]
rs6981708	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6981861	0.87[AMR][1000 genomes]
rs6982030	0.87[AMR][1000 genomes]
rs6992270	0.87[AMR][1000 genomes]
rs72724419	0.87[AMR][1000 genomes]
rs72724421	0.87[AMR][1000 genomes]
rs72724423	0.87[AMR][1000 genomes]
rs72724426	0.87[AMR][1000 genomes]
rs72724437	0.81[AMR][1000 genomes]
rs72724446	0.81[AMR][1000 genomes]
rs72724447	0.87[AMR][1000 genomes]
rs72724449	0.87[AMR][1000 genomes]
rs72724450	0.87[AMR][1000 genomes]
rs72724451	0.87[AMR][1000 genomes]
rs72724452	0.87[AMR][1000 genomes]
rs72724453	0.87[AMR][1000 genomes]
rs72724454	0.87[AMR][1000 genomes]
rs72724455	0.87[AMR][1000 genomes]
rs72724460	0.87[AMR][1000 genomes]
rs72724461	0.87[AMR][1000 genomes]
rs72724473	0.87[AMR][1000 genomes]
rs72724487	0.87[AMR][1000 genomes]
rs72724502	0.87[AMR][1000 genomes]
rs72726203	0.87[AMR][1000 genomes]
rs72726204	0.93[AMR][1000 genomes]
rs72726205	0.93[AMR][1000 genomes]
rs72726216	0.93[AMR][1000 genomes]
rs72726217	0.93[AMR][1000 genomes]
rs72726223	0.93[AMR][1000 genomes]
rs72726225	0.93[AMR][1000 genomes]
rs72726226	1.00[AMR][1000 genomes]
rs72726227	1.00[AMR][1000 genomes]
rs72726229	1.00[AMR][1000 genomes]
rs72726231	1.00[AMR][1000 genomes]
rs72726232	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72726234	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72726236	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72726240	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72726244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826256	0.87[AMR][1000 genomes]
rs7836273	0.87[AMR][1000 genomes]
rs929990	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131465400-131486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:131466000-131476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:131470400-131475200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:131470400-131475800	Weak transcription	Brain Germinal Matrix	brain
5	chr8:131470800-131475600	Weak transcription	GM12878-XiMat	blood

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