Variant report

Variant	rs7461459
Chromosome Location	chr8:131914648-131914649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10956556	0.88[EUR][1000 genomes]
rs10956558	0.98[ASN][1000 genomes]
rs10956559	1.00[ASN][1000 genomes]
rs10956560	0.98[ASN][1000 genomes]
rs10956561	0.89[EUR][1000 genomes]
rs11777051	0.89[EUR][1000 genomes]
rs11777920	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11781997	0.89[EUR][1000 genomes]
rs11784445	0.89[EUR][1000 genomes]
rs12155612	1.00[ASN][1000 genomes]
rs12543858	0.89[EUR][1000 genomes]
rs12547243	0.97[ASN][1000 genomes]
rs13248582	0.89[EUR][1000 genomes]
rs28692964	1.00[ASN][1000 genomes]
rs34269716	0.98[ASN][1000 genomes]
rs34673547	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34829883	0.89[EUR][1000 genomes]
rs35195692	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35874367	0.89[EUR][1000 genomes]
rs3923135	0.97[ASN][1000 genomes]
rs3923136	0.97[ASN][1000 genomes]
rs3923137	0.97[ASN][1000 genomes]
rs56235569	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs56251739	0.89[EUR][1000 genomes]
rs6415520	0.88[EUR][1000 genomes]
rs6415521	0.88[EUR][1000 genomes]
rs6415522	0.88[EUR][1000 genomes]
rs6415523	0.89[EUR][1000 genomes]
rs6470859	0.88[EUR][1000 genomes]
rs6998875	0.88[EUR][1000 genomes]
rs7001417	1.00[ASN][1000 genomes]
rs7001427	1.00[ASN][1000 genomes]
rs7001517	1.00[ASN][1000 genomes]
rs7011483	0.89[ASN][1000 genomes]
rs7016933	0.91[ASN][1000 genomes]
rs7461282	0.97[ASN][1000 genomes]
rs7463591	0.89[EUR][1000 genomes]
rs7464362	0.99[ASN][1000 genomes]
rs7819655	0.88[EUR][1000 genomes]
rs7821012	0.89[EUR][1000 genomes]
rs7829177	0.89[EUR][1000 genomes]
rs7832185	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612294	chr8:131645079-131923377	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891448	chr8:131668278-131968469	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1034107	chr8:131740146-131985765	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539747	chr8:131740146-131985765	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131912200-131915200	Weak transcription	HSMM	muscle
2	chr8:131912400-131917400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:131913600-131914800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr8:131913600-131914800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:131913600-131920800	Enhancers	NHDF-Ad	bronchial
6	chr8:131913800-131915200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:131914000-131915400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:131914200-131915800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:131914200-131915800	Enhancers	HUVEC	blood vessel
10	chr8:131914200-131916600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:131914400-131914800	Enhancers	NHEK	skin
12	chr8:131914400-131917600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:131914400-131920600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:131914600-131914800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:131914600-131915000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:131914600-131915800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links