Variant report

Variant	rs7462010
Chromosome Location	chr8:102615583-102615584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10095196	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10095480	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10955259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10955261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11783504	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12541858	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12544314	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12678441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1404949	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1573279	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1573280	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1573281	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1573282	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1573283	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16867971	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2030783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030786	0.87[CEU][hapmap]
rs2211918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2507794	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2507795	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35890104	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4002334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4305864	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4392865	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4588817	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4593516	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734027	0.88[CEU][hapmap]
rs4734028	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734544	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4734545	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4734546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734549	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734557	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4734558	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4734559	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4734560	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5023181	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs503895	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs567029	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs579505	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs6468780	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6468781	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6468782	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7819613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7820809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7821380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823289	0.88[CEU][hapmap]
rs7824065	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7835187	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7835323	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7836018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7836164	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838863	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7838983	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7845751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9642972	0.84[CEU][hapmap]
rs9649995	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757285	chr8:102609474-102649681	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759635	chr8:102609474-102649681	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2761235	chr8:102613079-102646059	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102590600-102631600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:102590600-102635200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:102597400-102616000	Weak transcription	Gastric	stomach
5	chr8:102597400-102620600	Weak transcription	Colonic Mucosa	Colon
6	chr8:102600600-102619200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:102601600-102616200	Weak transcription	Fetal Kidney	kidney
8	chr8:102607000-102616600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:102607800-102617000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:102609200-102616000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:102611600-102617200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:102612800-102615800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr8:102612800-102616600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:102612800-102617000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:102612800-102617600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:102612800-102623000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:102613000-102615800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:102613000-102615800	Weak transcription	Fetal Intestine Large	intestine
19	chr8:102613000-102616000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:102613000-102617000	Enhancers	Placenta Amnion	Placenta Amnion
21	chr8:102613000-102618800	Weak transcription	Pancreas	Pancrea
22	chr8:102613200-102615800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:102613200-102615800	Weak transcription	Fetal Intestine Small	intestine
24	chr8:102613200-102616000	Weak transcription	Fetal Stomach	stomach
25	chr8:102613200-102616000	Weak transcription	Osteobl	bone
26	chr8:102613200-102616200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:102613200-102617200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:102613800-102616000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:102614400-102616600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr8:102614400-102617800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:102614600-102616000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:102614600-102616000	Enhancers	NHEK	skin
33	chr8:102614600-102616200	Enhancers	Left Ventricle	heart
34	chr8:102614800-102617000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:102614800-102619000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:102614800-102619000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr8:102615000-102616200	Enhancers	Right Atrium	heart
38	chr8:102615000-102616800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr8:102615000-102616800	Enhancers	Fetal Heart	heart
40	chr8:102615000-102617000	Enhancers	HMEC	breast
41	chr8:102615000-102617400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:102615000-102619800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr8:102615000-102621600	Enhancers	Stomach Mucosa	stomach
44	chr8:102615200-102615600	Weak transcription	Lung	lung
45	chr8:102615200-102615600	Weak transcription	NHDF-Ad	bronchial
46	chr8:102615200-102615800	Weak transcription	Placenta	Placenta
47	chr8:102615200-102616000	Weak transcription	Fetal Brain Male	brain
48	chr8:102615200-102616200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr8:102615200-102616200	Weak transcription	Adipose Nuclei	Adipose
50	chr8:102615200-102616200	Weak transcription	Fetal Lung	lung

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