Variant report

Variant	rs7823289
Chromosome Location	chr8:102600608-102600609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102503587..102506004-chr8:102600065..102605597,5	MCF-7	breast:
2	chr8:102598688..102600794-chr8:102642302..102645052,2	MCF-7	breast:
3	chr8:102593460..102597757-chr8:102598202..102602881,7	MCF-7	breast:
4	chr8:102504593..102507266-chr8:102598553..102601179,3	MCF-7	breast:
5	chr8:102599624..102601949-chr8:102615535..102617652,3	MCF-7	breast:
6	chr8:102599405..102601179-chr8:102618530..102620423,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083307	Chromatin interaction
ENSG00000254024	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10095480	1.00[CEU][hapmap]
rs11774835	0.83[CEU][hapmap]
rs11783504	0.86[CEU][hapmap]
rs12541858	0.88[CEU][hapmap]
rs12678441	0.88[CEU][hapmap]
rs1404949	0.88[CEU][hapmap]
rs1573279	0.88[CEU][hapmap]
rs1573280	0.88[CEU][hapmap]
rs1573281	0.96[CEU][hapmap]
rs1573282	0.92[CEU][hapmap]
rs1573283	0.92[CEU][hapmap]
rs16867971	0.96[CEU][hapmap]
rs2030783	0.88[CEU][hapmap]
rs2030784	0.87[CEU][hapmap]
rs2030785	0.88[CEU][hapmap]
rs2030786	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2211918	0.88[CEU][hapmap]
rs2507794	0.82[CEU][hapmap]
rs2507795	0.88[CEU][hapmap]
rs4236766	0.88[CEU][hapmap]
rs4392865	0.88[CEU][hapmap]
rs4588817	0.88[CEU][hapmap]
rs4734027	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4734544	0.87[CEU][hapmap]
rs4734545	0.88[CEU][hapmap]
rs4734546	0.87[CEU][hapmap]
rs4734551	0.88[CEU][hapmap]
rs4734553	0.88[CEU][hapmap]
rs4734559	0.88[CEU][hapmap]
rs4734560	0.87[CEU][hapmap]
rs503895	0.92[CEU][hapmap]
rs567029	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs579505	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6468780	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs6468782	0.87[CEU][hapmap]
rs7462010	0.88[CEU][hapmap]
rs7820410	0.88[CEU][hapmap]
rs7820809	0.88[CEU][hapmap]
rs7824065	0.88[CEU][hapmap]
rs7835187	0.88[CEU][hapmap]
rs7838983	0.91[CEU][hapmap]
rs9297306	0.83[CHB][hapmap]
rs9642972	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs9649995	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891230	chr8:102569309-102604306	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv396957	chr8:102598319-102604328	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102590400-102603400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:102590600-102631600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:102590600-102635200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:102592000-102611000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:102594000-102603000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:102594000-102611600	Weak transcription	Fetal Intestine Large	intestine
8	chr8:102594200-102601000	Weak transcription	HMEC	breast
9	chr8:102594200-102603800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:102594200-102612000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:102594600-102603600	Weak transcription	Placenta	Placenta
12	chr8:102595800-102605400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:102596000-102615000	Weak transcription	Stomach Mucosa	stomach
14	chr8:102596400-102601400	Weak transcription	Fetal Kidney	kidney
15	chr8:102597400-102602200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:102597400-102603400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr8:102597400-102603600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:102597400-102604200	Weak transcription	Esophagus	oesophagus
19	chr8:102597400-102606600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:102597400-102616000	Weak transcription	Gastric	stomach
21	chr8:102597400-102620600	Weak transcription	Colonic Mucosa	Colon
22	chr8:102597800-102601800	Enhancers	Fetal Heart	heart
23	chr8:102598600-102601400	Enhancers	Colon Smooth Muscle	Colon
24	chr8:102599000-102603800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:102599000-102611600	Weak transcription	Pancreas	Pancrea
26	chr8:102599200-102602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr8:102599400-102601600	Enhancers	Fetal Intestine Small	intestine
28	chr8:102599800-102601200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:102600000-102603000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr8:102600200-102601000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:102600200-102601200	Enhancers	NHEK	skin
32	chr8:102600200-102602000	Enhancers	Fetal Brain Male	brain
33	chr8:102600400-102601000	Enhancers	Fetal Brain Female	brain
34	chr8:102600400-102601000	Enhancers	A549	lung
35	chr8:102600400-102601800	Enhancers	Fetal Lung	lung
36	chr8:102600400-102602800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:102600600-102602000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr8:102600600-102619200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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