Variant report

Variant	rs7463090
Chromosome Location	chr8:64314684-64314685
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10111839	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10113822	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1367811	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17211259	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28415720	0.89[ASN][1000 genomes]
rs28475399	0.81[ASN][1000 genomes]
rs28558511	0.92[ASN][1000 genomes]
rs55685837	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55867927	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56284187	0.81[ASN][1000 genomes]
rs72661779	0.91[ASN][1000 genomes]
rs72663843	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv6229	chr8:64282018-64326530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64314200-64315000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr8:64314200-64315000	Flanking Active TSS	GM12878-XiMat	blood
3	chr8:64314200-64315400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:64314400-64315000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr8:64314400-64315200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:64314400-64315200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:64314400-64315200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:64314400-64315200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:64314400-64315200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:64314400-64315200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:64314600-64314800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:64314600-64315000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:64314600-64315200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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