Variant report

Variant	rs74633961
Chromosome Location	chr6:167324184-167324185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:167324172-167324469	MCF10A-Er-Src	breast:	n/a	n/a
2	PBX3	chr6:167324163-167324322	GM12878	blood:	n/a	n/a
3	FOS	chr6:167324109-167324990	MCF10A-Er-Src	breast:	n/a	chr6:167324857-167324867 chr6:167324857-167324867 chr6:167324273-167324284
4	FOS	chr6:167324105-167324438	MCF10A-Er-Src	breast:	n/a	chr6:167324273-167324284
5	JUN	chr6:167323716-167325315	K562	blood:	n/a	chr6:167324857-167324867 chr6:167324857-167324867 chr6:167324273-167324284
6	FOS	chr6:167324109-167325001	MCF10A-Er-Src	breast:	n/a	chr6:167324857-167324867 chr6:167324857-167324867 chr6:167324273-167324284
7	FOS	chr6:167324150-167324659	MCF10A-Er-Src	breast:	n/a	chr6:167324273-167324284

Variant related genes	Relation type
RPS6KA2	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv605327	chr6:167185674-167360389	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1027314	chr6:167194653-167355961	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv538542	chr6:167194653-167355961	Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv605332	chr6:167198027-167353701	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
11	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
12	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
13	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
14	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167315800-167341600	Weak transcription	Pancreas	Pancrea
2	chr6:167318400-167343800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:167318600-167342400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:167318800-167324400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:167318800-167326800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:167319200-167327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:167320400-167326000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:167320400-167327400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:167321200-167326000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:167321200-167327800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:167321200-167340000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:167321400-167326000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:167321600-167331000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:167321600-167340600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:167321800-167324400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:167321800-167342200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:167322000-167324400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:167322000-167340200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:167322000-167340600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:167322000-167341600	Weak transcription	Gastric	stomach
21	chr6:167322200-167326000	Weak transcription	Brain Germinal Matrix	brain
22	chr6:167322200-167326200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:167322200-167330400	Weak transcription	HepG2	liver
24	chr6:167322400-167340000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:167322600-167324400	Weak transcription	GM12878-XiMat	blood
26	chr6:167322600-167330200	Weak transcription	Primary T cells from cord blood	blood
27	chr6:167322600-167340000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:167322800-167326200	Weak transcription	Primary B cells from cord blood	blood
29	chr6:167323000-167324400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:167323000-167326200	Weak transcription	Ovary	ovary
31	chr6:167323000-167332200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:167323400-167339200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:167323800-167325200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:167324000-167324200	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:167324000-167325400	Enhancers	K562	blood

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