Variant report

Variant	rs746408
Chromosome Location	chr3:135173980-135173981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12494120	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs711956	0.91[EUR][1000 genomes]
rs711958	0.92[EUR][1000 genomes]
rs711959	0.92[EUR][1000 genomes]
rs711961	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs823978	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs824086	0.93[EUR][1000 genomes]
rs824088	0.92[EUR][1000 genomes]
rs824090	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs824091	0.95[EUR][1000 genomes]
rs824093	0.95[EUR][1000 genomes]
rs824099	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs824100	0.97[EUR][1000 genomes]
rs844029	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs850699	0.93[EUR][1000 genomes]
rs941132	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9837324	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135165200-135174400	Weak transcription	Spleen	Spleen
2	chr3:135171800-135174800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:135172000-135174600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:135172400-135175000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:135173400-135174600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:135173800-135174000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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