Variant report

Variant	rs823978
Chromosome Location	chr3:135143297-135143298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1069511	0.84[ASN][1000 genomes]
rs1069513	0.84[ASN][1000 genomes]
rs12494120	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1661460	0.84[ASN][1000 genomes]
rs1725996	0.84[ASN][1000 genomes]
rs711924	0.84[ASN][1000 genomes]
rs711925	0.84[ASN][1000 genomes]
rs711937	0.84[ASN][1000 genomes]
rs711942	0.82[EUR][1000 genomes]
rs711956	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs711958	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs711959	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs711961	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73227924	1.00[ASN][1000 genomes]
rs746408	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs823966	0.84[ASN][1000 genomes]
rs823967	0.84[ASN][1000 genomes]
rs824074	0.84[EUR][1000 genomes]
rs824086	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824088	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs824090	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs824091	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs824093	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824099	0.96[EUR][1000 genomes]
rs824100	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs844029	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs850699	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs941132	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9837324	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135139000-135145600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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