Variant report

Variant	rs7467290
Chromosome Location	chr9:118358913-118358914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DEC1-2	chr9:118358893-118359024	XLOC_007530

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12115665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2188047	1.00[AFR][1000 genomes]
rs2188056	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2418358	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55652072	1.00[AFR][1000 genomes]
rs57608770	0.85[AMR][1000 genomes]
rs6478174	1.00[AFR][1000 genomes]
rs73511206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73524752	0.91[EUR][1000 genomes]
rs73524754	0.91[EUR][1000 genomes]
rs73524757	0.91[EUR][1000 genomes]
rs739342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7467654	1.00[AFR][1000 genomes]
rs9299227	1.00[AFR][1000 genomes]
rs9408871	1.00[AFR][1000 genomes]
rs980176	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv831698	chr9:118284259-118446456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118354400-118359200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:118356200-118361400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:118357000-118361600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:118357200-118367000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:118357400-118360800	Weak transcription	HMEC	breast
6	chr9:118357800-118359000	Enhancers	Adipose Nuclei	Adipose
7	chr9:118358000-118359400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:118358000-118359400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:118358000-118359400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:118358200-118359400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr9:118358200-118359400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:118358200-118359400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:118358200-118360000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:118358200-118360000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:118358200-118360000	Flanking Active TSS	NH-A	brain
16	chr9:118358200-118360000	Flanking Active TSS	Osteobl	bone
17	chr9:118358200-118362200	Enhancers	Fetal Stomach	stomach
18	chr9:118358400-118359400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr9:118358400-118360000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:118358400-118360000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:118358400-118360000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr9:118358400-118377800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:118358600-118359000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:118358600-118359000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr9:118358600-118359200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:118358600-118359200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:118358600-118359200	Enhancers	Fetal Kidney	kidney
28	chr9:118358600-118359400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:118358600-118359600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:118358600-118359600	Active TSS	HSMM	muscle
31	chr9:118358600-118359600	Active TSS	NHDF-Ad	bronchial
32	chr9:118358600-118359800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:118358600-118359800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:118358600-118359800	Active TSS	NHLF	lung
35	chr9:118358600-118361200	Enhancers	Hela-S3	cervix
36	chr9:118358800-118359000	Active TSS	Aorta	Aorta
37	chr9:118358800-118359000	Flanking Active TSS	A549	lung
38	chr9:118358800-118359000	Flanking Active TSS	HSMMtube	muscle
39	chr9:118358800-118359200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:118358800-118359200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:118358800-118359800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:118358800-118366400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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