Variant report

Variant	rs7467403
Chromosome Location	chr9:94484619-94484620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94484405..94487196-chr9:94488976..94490889,3	K562	blood:
2	chr9:94484329..94487574-chr9:94487693..94490602,4	K562	blood:
3	chr9:94422471..94424892-chr9:94484558..94488094,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10820899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992057	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992059	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992060	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13292198	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073735	0.82[JPT][hapmap]
rs4073736	0.82[JPT][hapmap]
rs41308940	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67857232	0.91[ASN][1000 genomes]
rs7869182	0.83[JPT][hapmap]
rs9409456	0.83[JPT][hapmap]
rs9409649	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94458000-94489800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:94474200-94486000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:94476400-94485400	Weak transcription	Fetal Lung	lung
4	chr9:94477000-94487000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:94477200-94489800	Weak transcription	Right Atrium	heart
6	chr9:94477200-94496800	Weak transcription	NHLF	lung
7	chr9:94477200-94533000	Weak transcription	Fetal Kidney	kidney
8	chr9:94482400-94491600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:94483000-94496600	Strong transcription	Fetal Stomach	stomach
10	chr9:94483400-94486000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:94483400-94486800	Strong transcription	Colon Smooth Muscle	Colon
12	chr9:94483400-94489800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:94483400-94501600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:94483600-94484800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:94483600-94487600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:94483600-94504000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:94483600-94519400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr9:94483800-94485400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:94483800-94485800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:94483800-94486200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:94483800-94489400	Strong transcription	Stomach Smooth Muscle	stomach
22	chr9:94484000-94485600	Weak transcription	Spleen	Spleen
23	chr9:94484200-94486000	Weak transcription	Esophagus	oesophagus
24	chr9:94484200-94489200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:94484400-94485000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:94484400-94486800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:94484400-94487000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:94484400-94487000	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:94484400-94488200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:94484400-94488400	Strong transcription	Fetal Intestine Large	intestine
31	chr9:94484400-94489000	Strong transcription	Gastric	stomach
32	chr9:94484400-94489400	Strong transcription	Fetal Intestine Small	intestine
33	chr9:94484600-94485400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:94484600-94487400	Weak transcription	K562	blood
35	chr9:94484600-94488600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:94484600-94488800	Weak transcription	Placenta	Placenta
37	chr9:94484600-94489000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:94484600-94489000	Strong transcription	Ovary	ovary

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