Variant report

Variant	rs7869182
Chromosome Location	chr9:94497042-94497043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94496562..94497107-chr9:94520780..94521483,2	MCF-7	breast:
2	chr9:94496411..94497072-chr9:94712544..94713048,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10820899	0.82[JPT][hapmap]
rs10820900	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10992058	0.82[JPT][hapmap]
rs10992059	0.83[JPT][hapmap]
rs10992060	0.82[JPT][hapmap]
rs10992063	0.81[JPT][hapmap]
rs3935601	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4073735	0.81[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs4073736	0.81[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs4237215	0.80[ASN][1000 genomes]
rs4467996	0.81[CEU][hapmap]
rs7031729	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7467403	0.83[JPT][hapmap]
rs7855522	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9409456	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409457	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409458	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9409649	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9409650	0.99[ASN][1000 genomes]
rs9409651	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9409652	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv6612	chr9:94490644-94535738	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94477200-94533000	Weak transcription	Fetal Kidney	kidney
2	chr9:94483400-94501600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:94483600-94504000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:94483600-94519400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:94485800-94498400	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:94486200-94521000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:94486800-94517400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:94487000-94502200	Weak transcription	Esophagus	oesophagus
9	chr9:94487000-94535400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:94489000-94508800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:94490200-94497400	Strong transcription	Fetal Intestine Small	intestine
12	chr9:94490400-94521000	Weak transcription	Right Atrium	heart
13	chr9:94491600-94501000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:94493200-94497600	Strong transcription	Fetal Intestine Large	intestine
15	chr9:94493200-94517400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:94494200-94498400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:94495000-94501800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:94495600-94498400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:94495600-94498400	Weak transcription	Gastric	stomach
20	chr9:94495600-94498800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:94496400-94497200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:94496400-94497200	Enhancers	Rectal Smooth Muscle	rectum
23	chr9:94496400-94499800	Strong transcription	K562	blood
24	chr9:94496600-94497200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:94496600-94497200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr9:94496600-94497200	Enhancers	Placenta	Placenta
27	chr9:94496600-94497200	Genic enhancers	Fetal Stomach	stomach
28	chr9:94496600-94497200	Enhancers	Ovary	ovary
29	chr9:94496600-94497200	Enhancers	Placenta Amnion	Placenta Amnion
30	chr9:94496600-94497400	Enhancers	Duodenum Mucosa	Duodenum
31	chr9:94496600-94499800	Strong transcription	Fetal Lung	lung
32	chr9:94496800-94497200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:94496800-94497200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:94496800-94497200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:94496800-94497200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
36	chr9:94496800-94497200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:94496800-94497200	Enhancers	Brain Anterior Caudate	brain
38	chr9:94496800-94497200	Enhancers	Fetal Muscle Trunk	muscle
39	chr9:94496800-94497200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr9:94496800-94497200	Enhancers	Spleen	Spleen
41	chr9:94496800-94497200	Enhancers	NHLF	lung
42	chr9:94496800-94497200	Enhancers	Osteobl	bone
43	chr9:94496800-94497400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:94496800-94497400	Genic enhancers	Colon Smooth Muscle	Colon
45	chr9:94496800-94497600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:94496800-94497600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:94496800-94497600	Genic enhancers	Stomach Smooth Muscle	stomach
48	chr9:94497000-94497200	Enhancers	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links