Variant report

Variant	rs7467699
Chromosome Location	chr9:104180857-104180858
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104159430..104161910-chr9:104180368..104183208,3	MCF-7	breast:
2	chr9:104167280..104171241-chr9:104178855..104183117,5	K562	blood:
3	chr9:104167820..104171241-chr9:104178855..104183117,4	K562	blood:

Variant related genes	Relation type
ENSG00000136870	Chromatin interaction
ENSG00000136897	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10819926	0.80[TSI][hapmap]
rs1929480	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3739719	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104172800-104181200	Weak transcription	Fetal Heart	heart
2	chr9:104172800-104187000	Weak transcription	Left Ventricle	heart
3	chr9:104176400-104185600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:104178000-104182600	Weak transcription	Liver	Liver
5	chr9:104178200-104182200	Weak transcription	Ovary	ovary
6	chr9:104178200-104186800	Weak transcription	Fetal Brain Female	brain
7	chr9:104178400-104183600	Weak transcription	Fetal Intestine Large	intestine
8	chr9:104178400-104187000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:104179200-104181000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
10	chr9:104179200-104182400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:104179400-104188800	Enhancers	HepG2	liver
12	chr9:104179800-104181000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:104179800-104182800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:104180000-104181200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr9:104180200-104181600	Weak transcription	Fetal Intestine Small	intestine
16	chr9:104180200-104181800	Enhancers	Pancreas	Pancrea
17	chr9:104180400-104181800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:104180400-104184600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:104180600-104181600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:104180600-104185800	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:104180800-104181200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:104180800-104181200	ZNF genes & repeats	Aorta	Aorta
23	chr9:104180800-104181400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:104180800-104181600	Enhancers	NH-A	brain
25	chr9:104180800-104181600	Enhancers	Osteobl	bone
26	chr9:104180800-104181800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:104180800-104181800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:104180800-104181800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:104180800-104181800	Enhancers	HSMM	muscle
30	chr9:104180800-104181800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links