Variant report

Variant	rs7483469
Chromosome Location	chr11:71240719-71240720
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1002171	0.86[EUR][1000 genomes]
rs11233868	0.83[ASN][1000 genomes]
rs11233947	0.81[EUR][1000 genomes]
rs11501814	0.90[EUR][1000 genomes]
rs12275121	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12275635	0.83[ASN][1000 genomes]
rs12275636	0.83[ASN][1000 genomes]
rs12277408	0.81[EUR][1000 genomes]
rs12283114	0.84[EUR][1000 genomes]
rs12283177	0.84[EUR][1000 genomes]
rs12283185	0.84[EUR][1000 genomes]
rs12286569	0.84[EUR][1000 genomes]
rs12286616	0.84[EUR][1000 genomes]
rs12289036	0.88[EUR][1000 genomes]
rs12289074	0.88[EUR][1000 genomes]
rs12289358	0.80[ASN][1000 genomes]
rs12574206	0.83[ASN][1000 genomes]
rs12575605	0.90[AMR][1000 genomes]
rs12575622	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12577807	0.82[EUR][1000 genomes]
rs17161576	0.82[EUR][1000 genomes]
rs17161578	0.81[EUR][1000 genomes]
rs2298776	0.82[EUR][1000 genomes]
rs28823295	0.90[AMR][1000 genomes]
rs3794062	0.83[ASN][1000 genomes]
rs3794064	0.83[ASN][1000 genomes]
rs3814733	0.83[ASN][1000 genomes]
rs57017893	0.81[EUR][1000 genomes]
rs57500217	0.83[ASN][1000 genomes]
rs57718633	0.92[EUR][1000 genomes]
rs58615796	0.82[EUR][1000 genomes]
rs59379414	0.83[ASN][1000 genomes]
rs59422671	0.86[EUR][1000 genomes]
rs59487812	0.83[ASN][1000 genomes]
rs59511885	0.86[EUR][1000 genomes]
rs59972361	0.81[EUR][1000 genomes]
rs7114525	0.83[ASN][1000 genomes]
rs7120978	0.83[ASN][1000 genomes]
rs7121106	0.83[ASN][1000 genomes]
rs7130479	0.81[EUR][1000 genomes]
rs7940351	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv468632	chr11:71200320-71289089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv555402	chr11:71200320-71289089	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv897900	chr11:71234107-71276909	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv897899	chr11:71234107-71277981	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	esv3363568	chr11:71237277-71275754	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	esv3425891	chr11:71237287-71275790	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	esv3528100	chr11:71237332-71275725	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	esv3528101	chr11:71237332-71275725	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	esv3432021	chr11:71237346-71275760	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71232800-71243600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:71232800-71245800	Weak transcription	Pancreas	Pancrea
3	chr11:71232800-71259800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:71239000-71241400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:71239000-71246400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:71239800-71241600	Weak transcription	HepG2	liver

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