Variant report

Variant	rs7483680
Chromosome Location	chr11:93019731-93019732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10831021	0.90[ASN][1000 genomes]
rs11819901	0.88[ASN][1000 genomes]
rs11824203	0.80[AFR][1000 genomes]
rs11824208	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11825153	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11825787	0.88[ASN][1000 genomes]
rs11825947	0.80[AFR][1000 genomes]
rs12224936	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1348872	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1579874	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16912471	0.81[AFR][1000 genomes]
rs4575225	0.83[AMR][1000 genomes]
rs56713156	0.88[ASN][1000 genomes]
rs72970864	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv1807162	chr11:93013387-93022144	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv555905	chr11:93018077-93022144	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3454842	chr11:93019304-93024102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93016600-93020600	Weak transcription	GM12878-XiMat	blood
2	chr11:93018800-93020600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:93018800-93021400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:93019400-93028600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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