Variant report

Variant	rs11825947
Chromosome Location	chr11:93028814-93028815
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11020239	0.84[ASN][1000 genomes]
rs11020265	0.83[YRI][hapmap]
rs11020278	0.80[ASN][1000 genomes]
rs11020279	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11020307	1.00[JPT][hapmap]
rs11020317	0.81[JPT][hapmap]
rs11020318	0.83[JPT][hapmap]
rs11824203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1579874	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912471	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918890	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4575225	0.83[ASN][1000 genomes]
rs61919162	0.95[ASN][1000 genomes]
rs61919163	0.92[ASN][1000 genomes]
rs7483680	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2421577	chr11:93020483-93029461	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv555912	chr11:93021163-93028873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv555913	chr11:93021163-93028940	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv555914	chr11:93021163-93031855	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv555915	chr11:93021163-93033807	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv555917	chr11:93021215-93028940	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv555921	chr11:93021604-93028940	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv555922	chr11:93021656-93028940	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv555923	chr11:93021851-93028940	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv555925	chr11:93022040-93028940	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv555926	chr11:93022092-93028873	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv555927	chr11:93022092-93028940	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv555928	chr11:93022092-93031855	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv555930	chr11:93022144-93028940	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv555933	chr11:93023382-93028873	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv555934	chr11:93023382-93028940	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv516245	chr11:93025578-93028940	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv555935	chr11:93025578-93028940	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv555937	chr11:93025749-93028940	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv555939	chr11:93026242-93028940	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv555940	chr11:93026912-93028940	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93028400-93029000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:93028600-93029000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:93028600-93029000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr11:93028600-93029200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:93028600-93029200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:93028600-93029400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:93028600-93029400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:93028600-93029600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr11:93028800-93029000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:93028800-93029200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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