Variant report

Variant	rs11020279
Chromosome Location	chr11:93089357-93089358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10831029	1.00[ASW][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs10831055	0.81[JPT][hapmap]
rs11020275	0.99[AFR][1000 genomes]
rs11020278	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020280	0.90[AFR][1000 genomes]
rs11020286	0.84[AFR][1000 genomes]
rs11020303	1.00[ASW][hapmap];0.86[LWK][hapmap];0.85[MKK][hapmap]
rs11020307	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11020313	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11020317	0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11020318	0.81[CEU][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs11020357	1.00[YRI][hapmap]
rs11020379	0.83[ASW][hapmap];0.80[YRI][hapmap]
rs11499629	0.84[AFR][1000 genomes]
rs11824203	0.80[ASN][1000 genomes]
rs11825947	0.80[ASN][1000 genomes]
rs12270883	0.81[AFR][1000 genomes]
rs12271156	0.84[AFR][1000 genomes]
rs12272610	0.84[AFR][1000 genomes]
rs12275682	0.81[AFR][1000 genomes]
rs12276463	1.00[ASW][hapmap];0.80[LWK][hapmap]
rs12276820	0.81[AFR][1000 genomes]
rs12277063	1.00[ASW][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12280126	0.89[AFR][1000 genomes]
rs12282377	0.81[AFR][1000 genomes]
rs12283039	0.94[AFR][1000 genomes]
rs12283758	0.81[AFR][1000 genomes]
rs12284477	0.87[YRI][hapmap];0.89[AFR][1000 genomes]
rs12285123	0.81[AFR][1000 genomes]
rs12285128	0.81[AFR][1000 genomes]
rs12286814	1.00[ASW][hapmap];0.86[LWK][hapmap];0.85[MKK][hapmap]
rs12287849	1.00[ASW][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12288325	0.94[AFR][1000 genomes]
rs12288686	0.80[YRI][hapmap]
rs12292127	1.00[ASW][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12292451	1.00[ASW][hapmap];0.86[LWK][hapmap]
rs12292876	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12293300	0.81[AFR][1000 genomes]
rs12294288	0.84[AFR][1000 genomes]
rs12295907	0.84[AFR][1000 genomes]
rs12295955	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs12575249	0.82[JPT][hapmap]
rs12577256	0.86[JPT][hapmap]
rs16912471	0.80[ASN][1000 genomes]
rs16918890	0.81[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2124560	0.84[AFR][1000 genomes]
rs2124561	0.84[AFR][1000 genomes]
rs2895469	0.82[AFR][1000 genomes]
rs61919162	0.85[ASN][1000 genomes]
rs61919163	0.88[ASN][1000 genomes]
rs61919164	0.92[ASN][1000 genomes]
rs61919177	0.84[AFR][1000 genomes]
rs977255	1.00[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];0.84[AFR][1000 genomes]
rs977256	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11020279	SLC36A4	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93089200-93089600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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