Variant report
Variant | rs11020318 |
---|---|
Chromosome Location | chr11:93149258-93149259 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10831029 | 0.89[YRI][hapmap];0.82[AFR][1000 genomes] |
rs10831033 | 0.81[AFR][1000 genomes] |
rs11020275 | 0.82[AFR][1000 genomes] |
rs11020278 | 0.84[AFR][1000 genomes] |
rs11020279 | 0.81[CEU][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes] |
rs11020303 | 0.81[AFR][1000 genomes] |
rs11020304 | 0.81[AFR][1000 genomes] |
rs11020306 | 0.81[AFR][1000 genomes] |
rs11020307 | 0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11020309 | 0.81[AFR][1000 genomes] |
rs11020311 | 0.81[AFR][1000 genomes] |
rs11020313 | 0.89[YRI][hapmap];0.92[AFR][1000 genomes] |
rs11020314 | 0.81[AFR][1000 genomes] |
rs11020317 | 0.89[CHB][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11020357 | 0.89[YRI][hapmap] |
rs12277063 | 0.89[YRI][hapmap];0.82[AFR][1000 genomes] |
rs12280126 | 0.92[AFR][1000 genomes] |
rs12283039 | 0.86[AFR][1000 genomes] |
rs12284477 | 0.88[YRI][hapmap];0.92[AFR][1000 genomes] |
rs12286814 | 0.81[AFR][1000 genomes] |
rs12287849 | 0.89[YRI][hapmap];0.92[AFR][1000 genomes] |
rs12288325 | 0.86[AFR][1000 genomes] |
rs12289685 | 0.81[AFR][1000 genomes] |
rs12292127 | 0.89[YRI][hapmap];0.81[AFR][1000 genomes] |
rs12292451 | 0.81[AFR][1000 genomes] |
rs12292876 | 0.89[YRI][hapmap];0.92[AFR][1000 genomes] |
rs12295955 | 0.94[YRI][hapmap];0.89[AFR][1000 genomes] |
rs16918890 | 0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs57942067 | 0.81[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1039134 | chr11:92790000-93219942 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv898181 | chr11:93072843-93662459 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
3 | nsv555941 | chr11:93129893-93181050 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv439 | chr11:93135936-93171682 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv508649 | chr11:93140899-93181092 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv1039623 | chr11:93141461-93328739 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
No data |