Variant report

Variant	rs11020307
Chromosome Location	chr11:93131632-93131633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10831029	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10831033	0.86[AFR][1000 genomes]
rs10831055	0.81[JPT][hapmap]
rs11020275	0.88[AFR][1000 genomes]
rs11020278	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11020279	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11020280	0.85[AFR][1000 genomes]
rs11020286	0.81[AFR][1000 genomes]
rs11020298	0.85[AFR][1000 genomes]
rs11020301	0.82[AFR][1000 genomes]
rs11020303	0.86[AFR][1000 genomes]
rs11020304	0.86[AFR][1000 genomes]
rs11020305	0.82[AFR][1000 genomes]
rs11020306	0.86[AFR][1000 genomes]
rs11020309	0.86[AFR][1000 genomes]
rs11020311	0.86[AFR][1000 genomes]
rs11020313	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs11020314	0.86[AFR][1000 genomes]
rs11020317	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020318	0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap]
rs11020357	1.00[YRI][hapmap]
rs11499629	0.81[AFR][1000 genomes]
rs12271156	0.81[AFR][1000 genomes]
rs12272610	0.81[AFR][1000 genomes]
rs12275682	0.84[AFR][1000 genomes]
rs12276820	0.84[AFR][1000 genomes]
rs12277063	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12280126	0.82[CHB][hapmap];0.97[AFR][1000 genomes]
rs12281366	0.81[AFR][1000 genomes]
rs12282377	0.84[AFR][1000 genomes]
rs12283039	0.92[AFR][1000 genomes]
rs12283758	0.84[AFR][1000 genomes]
rs12284477	0.85[YRI][hapmap];0.97[AFR][1000 genomes]
rs12284681	0.83[AFR][1000 genomes]
rs12285123	0.84[AFR][1000 genomes]
rs12285128	0.84[AFR][1000 genomes]
rs12286273	0.81[AFR][1000 genomes]
rs12286814	0.86[AFR][1000 genomes]
rs12287849	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12288325	0.92[AFR][1000 genomes]
rs12289685	0.86[AFR][1000 genomes]
rs12289847	0.83[AFR][1000 genomes]
rs12292127	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12292451	0.86[AFR][1000 genomes]
rs12292876	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12293300	0.84[AFR][1000 genomes]
rs12293344	0.82[AFR][1000 genomes]
rs12294288	0.81[AFR][1000 genomes]
rs12295907	0.81[AFR][1000 genomes]
rs12295955	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12575249	0.81[JPT][hapmap]
rs12577256	0.86[JPT][hapmap]
rs16918890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2124560	0.81[AFR][1000 genomes]
rs2124561	0.81[AFR][1000 genomes]
rs57942067	0.86[AFR][1000 genomes]
rs61919177	0.81[AFR][1000 genomes]
rs61919178	0.82[AFR][1000 genomes]
rs61919180	0.81[AFR][1000 genomes]
rs72972371	0.84[AFR][1000 genomes]
rs977255	0.81[AFR][1000 genomes]
rs977256	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1035530	chr11:93114111-93148948	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv555941	chr11:93129893-93181050	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93126800-93145200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:93130600-93131800	Enhancers	Fetal Heart	heart

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