Variant report

Variant	rs11020278
Chromosome Location	chr11:93083843-93083844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93083670..93085677-chr11:93095167..93096893,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10831029	0.99[AFR][1000 genomes]
rs11020275	0.99[AFR][1000 genomes]
rs11020279	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020280	0.90[AFR][1000 genomes]
rs11020286	0.84[AFR][1000 genomes]
rs11020307	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11020313	0.89[AFR][1000 genomes]
rs11020317	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11499629	0.84[AFR][1000 genomes]
rs11824203	0.80[ASN][1000 genomes]
rs11825947	0.80[ASN][1000 genomes]
rs12270883	0.81[AFR][1000 genomes]
rs12271156	0.84[AFR][1000 genomes]
rs12272610	0.84[AFR][1000 genomes]
rs12275682	0.81[AFR][1000 genomes]
rs12276820	0.81[AFR][1000 genomes]
rs12277063	0.93[AFR][1000 genomes]
rs12280126	0.89[AFR][1000 genomes]
rs12282377	0.81[AFR][1000 genomes]
rs12283039	0.94[AFR][1000 genomes]
rs12283758	0.81[AFR][1000 genomes]
rs12284477	0.89[AFR][1000 genomes]
rs12285123	0.81[AFR][1000 genomes]
rs12285128	0.81[AFR][1000 genomes]
rs12287849	0.89[AFR][1000 genomes]
rs12288325	0.94[AFR][1000 genomes]
rs12292127	0.83[AFR][1000 genomes]
rs12292876	0.89[AFR][1000 genomes]
rs12293300	0.81[AFR][1000 genomes]
rs12294288	0.84[AFR][1000 genomes]
rs12295907	0.84[AFR][1000 genomes]
rs12295955	0.92[AFR][1000 genomes]
rs16912471	0.80[ASN][1000 genomes]
rs16918890	0.82[ASN][1000 genomes]
rs2124560	0.84[AFR][1000 genomes]
rs2124561	0.84[AFR][1000 genomes]
rs2895469	0.82[AFR][1000 genomes]
rs61919162	0.85[ASN][1000 genomes]
rs61919163	0.88[ASN][1000 genomes]
rs61919164	0.92[ASN][1000 genomes]
rs61919177	0.84[AFR][1000 genomes]
rs977255	0.84[AFR][1000 genomes]
rs977256	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93082400-93089000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:93083400-93086400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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