Variant report

Variant	rs10831055
Chromosome Location	chr11:93262023-93262024
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93256846..93259343-chr11:93261721..93264520,2	K562	blood:
2	chr11:93260994..93262500-chr11:93275483..93277703,2	K562	blood:

Variant related genes	Relation type
ENSG00000166002	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11020279	0.81[JPT][hapmap]
rs11020307	0.81[JPT][hapmap]
rs11020392	0.84[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12573898	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12575249	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs12577256	0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs16918890	0.80[JPT][hapmap]
rs58336329	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93252000-93266800	Enhancers	Fetal Thymus	thymus
2	chr11:93253800-93266200	Weak transcription	Fetal Brain Female	brain
3	chr11:93255000-93263600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:93255000-93274600	Weak transcription	Hela-S3	cervix
5	chr11:93255600-93262200	Weak transcription	Brain Germinal Matrix	brain
6	chr11:93255800-93263000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:93256000-93262200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:93256200-93263800	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:93256200-93266000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr11:93256400-93266600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:93257200-93264800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:93257400-93264000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:93257400-93264800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:93257400-93266600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:93257600-93263000	Enhancers	HepG2	liver
16	chr11:93257600-93264000	Enhancers	Right Ventricle	heart
17	chr11:93257600-93264400	Enhancers	Fetal Muscle Leg	muscle
18	chr11:93257800-93264200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:93257800-93264200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:93258000-93262400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:93258000-93264600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:93258200-93266400	Enhancers	Primary T cells from cord blood	blood
23	chr11:93258400-93262400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:93258400-93274800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:93258600-93262800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:93259000-93262200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:93259200-93262200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:93259400-93262200	Weak transcription	NH-A	brain
29	chr11:93259400-93263200	Weak transcription	NHDF-Ad	bronchial
30	chr11:93259600-93262400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:93259800-93262200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:93259800-93264000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:93260000-93263000	Weak transcription	Fetal Kidney	kidney
34	chr11:93260200-93262600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:93260200-93262600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:93260200-93263600	Enhancers	Fetal Muscle Trunk	muscle
37	chr11:93260400-93262600	Weak transcription	Colonic Mucosa	Colon
38	chr11:93260400-93263000	Enhancers	Liver	Liver
39	chr11:93260400-93263000	Weak transcription	Small Intestine	intestine
40	chr11:93260400-93263200	Weak transcription	K562	blood
41	chr11:93260400-93266600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:93260600-93262600	Weak transcription	Fetal Intestine Large	intestine
43	chr11:93261200-93262200	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr11:93261400-93262200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:93261400-93262200	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:93261400-93262800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:93261400-93263400	Enhancers	Fetal Brain Male	brain
48	chr11:93261400-93263600	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr11:93261400-93263600	Enhancers	Brain Anterior Caudate	brain
50	chr11:93261400-93263600	Enhancers	Brain Hippocampus Middle	brain

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