Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1037435	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1037436	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10785503	1.00[ASN][1000 genomes]
rs10785505	0.99[ASN][1000 genomes]
rs10785506	1.00[ASN][1000 genomes]
rs10785507	0.99[ASN][1000 genomes]
rs10785509	0.88[ASN][1000 genomes]
rs10785510	0.86[ASN][1000 genomes]
rs10785511	0.85[ASN][1000 genomes]
rs10880652	0.97[ASN][1000 genomes]
rs10880653	0.86[ASN][1000 genomes]
rs10880654	0.88[ASN][1000 genomes]
rs1349621	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1376997	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377280	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452256	0.97[ASN][1000 genomes]
rs1452257	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869253	0.99[ASN][1000 genomes]
rs4143007	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61930801	0.98[ASN][1000 genomes]
rs61930833	1.00[ASN][1000 genomes]
rs728065	0.97[ASN][1000 genomes]
rs7966066	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979765	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:44940200-44999600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr12:44943400-44998600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:44946400-44976400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr12:44950000-44964000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:44954400-44970000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:44957400-44964000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:44959200-44964000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:44960000-44964200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr12:44960200-44964800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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