Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1037435	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1037436	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785503	0.97[ASN][1000 genomes]
rs10785505	0.96[ASN][1000 genomes]
rs10785506	0.97[ASN][1000 genomes]
rs10785507	0.96[ASN][1000 genomes]
rs10785509	0.85[ASN][1000 genomes]
rs10785510	0.83[ASN][1000 genomes]
rs10785511	0.82[ASN][1000 genomes]
rs10880652	1.00[ASN][1000 genomes]
rs10880653	0.83[ASN][1000 genomes]
rs10880654	0.85[ASN][1000 genomes]
rs1349621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376997	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1377280	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1452256	1.00[ASN][1000 genomes]
rs1452257	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1869253	0.96[ASN][1000 genomes]
rs4143007	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61930801	0.95[ASN][1000 genomes]
rs61930833	0.97[ASN][1000 genomes]
rs728065	1.00[ASN][1000 genomes]
rs7486016	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7966066	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:44936600-44944400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:44937600-44947600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:44940000-44942600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:44940200-44942800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr12:44940200-44999600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:44941000-44941600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr12:44941200-44943400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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