Variant report

Variant	rs749176
Chromosome Location	chr10:97290939-97290940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97277519..97280426-chr10:97289369..97291949,2	K562	blood:
2	chr10:97289605..97292487-chr10:97295547..97298455,3	K562	blood:
3	chr10:97290800..97293543-chr10:97293667..97298455,5	K562	blood:
4	chr10:97288240..97291346-chr10:97319603..97322550,3	K562	blood:
5	chr10:97285880..97288158-chr10:97290360..97291993,2	K562	blood:
6	chr10:97262883..97265174-chr10:97289179..97291481,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12240292	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12244553	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12247017	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12254671	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12772243	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12776555	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28419260	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35793106	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4918944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4918947	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
2	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
3	chr10:97280600-97291000	Enhancers	Colon Smooth Muscle	Colon
4	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
5	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
8	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:97285200-97292400	Enhancers	Fetal Intestine Large	intestine
13	chr10:97286200-97294800	Weak transcription	Small Intestine	intestine
14	chr10:97286200-97296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:97286800-97293200	Weak transcription	Liver	Liver
16	chr10:97287800-97292800	Enhancers	Brain Cingulate Gyrus	brain
17	chr10:97288200-97291000	Enhancers	HepG2	liver
18	chr10:97288600-97291800	Weak transcription	Placenta	Placenta
19	chr10:97288800-97292400	Enhancers	Brain Anterior Caudate	brain
20	chr10:97288800-97292800	Enhancers	Right Atrium	heart
21	chr10:97288800-97293600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:97288800-97294400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:97289000-97291200	Enhancers	Fetal Brain Female	brain
24	chr10:97289000-97291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:97289000-97291400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:97289000-97292400	Enhancers	Fetal Stomach	stomach
27	chr10:97289000-97294800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:97289000-97295000	Enhancers	Right Ventricle	heart
29	chr10:97289200-97291000	Enhancers	Brain Angular Gyrus	brain
30	chr10:97289200-97291600	Enhancers	Primary hematopoietic stem cells	blood
31	chr10:97289200-97292200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr10:97289200-97292400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:97289200-97292600	Enhancers	Lung	lung
34	chr10:97289200-97299200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
36	chr10:97289400-97291000	Enhancers	Psoas Muscle	Psoas
37	chr10:97289400-97291200	Enhancers	Pancreas	Pancrea
38	chr10:97289400-97291800	Weak transcription	HUVEC	blood vessel
39	chr10:97289400-97292200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:97289400-97296200	Weak transcription	HSMMtube	muscle
41	chr10:97289400-97303800	Weak transcription	HSMM	muscle
42	chr10:97289800-97291800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:97289800-97292600	Genic enhancers	Fetal Intestine Small	intestine
44	chr10:97289800-97293800	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr10:97290000-97291600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:97290000-97292000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr10:97290000-97292000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:97290000-97292800	Enhancers	Brain Substantia Nigra	brain
49	chr10:97290000-97298600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum

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