Variant report

Variant	rs12776555
Chromosome Location	chr10:97284362-97284363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97280950..97286355-chr10:97287261..97290251,5	K562	blood:
2	chr10:97282540..97285200-chr10:97291326..97293754,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12240292	0.86[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12244553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12247017	0.86[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12254671	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12772243	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28419260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34597764	0.84[AFR][1000 genomes]
rs35793106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4918944	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4918947	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs749176	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
3	chr10:97279200-97285800	Weak transcription	Pancreas	Pancrea
4	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
7	chr10:97279400-97285800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:97279600-97284800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:97279800-97284600	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97279800-97288200	Weak transcription	HepG2	liver
11	chr10:97279800-97290600	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:97280400-97289000	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:97280600-97291000	Enhancers	Colon Smooth Muscle	Colon
14	chr10:97280800-97285000	Enhancers	Right Atrium	heart
15	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
16	chr10:97281000-97285600	Weak transcription	Fetal Intestine Small	intestine
17	chr10:97281200-97284600	Weak transcription	Right Ventricle	heart
18	chr10:97281600-97285800	Weak transcription	Gastric	stomach
19	chr10:97281600-97289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:97282200-97285200	Enhancers	Brain Angular Gyrus	brain
23	chr10:97282200-97285400	Enhancers	Brain Cingulate Gyrus	brain
24	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
25	chr10:97282400-97288800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:97282600-97284400	Enhancers	Stomach Smooth Muscle	stomach
29	chr10:97282600-97286600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:97282800-97285800	Weak transcription	Aorta	Aorta
31	chr10:97282800-97287400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr10:97282800-97288800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:97283400-97286000	Weak transcription	Fetal Brain Male	brain
36	chr10:97283400-97287000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:97283600-97284400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:97283600-97284800	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:97283600-97284800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:97283600-97286000	Weak transcription	Stomach Mucosa	stomach
41	chr10:97283800-97284400	Enhancers	K562	blood
42	chr10:97283800-97284600	Weak transcription	Brain Anterior Caudate	brain
43	chr10:97283800-97284800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr10:97284000-97284400	Enhancers	Psoas Muscle	Psoas
45	chr10:97284000-97284600	Genic enhancers	Left Ventricle	heart
46	chr10:97284000-97284600	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr10:97284000-97285000	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr10:97284000-97285000	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr10:97284200-97284400	Enhancers	Lung	lung
50	chr10:97284200-97284600	Weak transcription	Liver	Liver

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