Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10514484	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11647373	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11647773	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12444152	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12926289	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1478503	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1478511	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1564217	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1600192	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4145109	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4889099	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4889106	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4889107	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6564733	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6564734	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6564735	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7188145	0.80[ASN][1000 genomes]
rs7195551	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7201995	0.89[EUR][1000 genomes]
rs7202741	0.95[EUR][1000 genomes]
rs8057500	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80151800-80159600	Weak transcription	Adipose Nuclei	Adipose
2	chr16:80157600-80159600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr16:80158400-80162200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:80159000-80159800	Enhancers	Stomach Smooth Muscle	stomach
5	chr16:80159000-80160200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr16:80159000-80160200	Enhancers	HSMMtube	muscle
7	chr16:80159200-80159600	Enhancers	Osteobl	bone
8	chr16:80159200-80160000	Enhancers	Ovary	ovary
9	chr16:80159200-80160400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: