Variant report

Variant	rs7516311
Chromosome Location	chr1:151483892-151483893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151428938..151433041-chr1:151480813..151490135,53	MCF-7	breast:
2	chr1:151481429..151491154-chr1:151502501..151517487,49	MCF-7	breast:
3	chr1:151481542..151488437-chr1:151515636..151525415,14	MCF-7	breast:
4	chr1:151482538..151486660-chr1:151496961..151502245,5	MCF-7	breast:
5	chr1:151483025..151485659-chr1:152019731..152022240,2	MCF-7	breast:
6	chr1:151410006..151411683-chr1:151482922..151485531,2	MCF-7	breast:
7	chr1:151483091..151485437-chr1:151490674..151493564,2	K562	blood:
8	chr1:151477348..151494376-chr1:151504804..151515249,50	MCF-7	breast:
9	chr1:151414283..151420812-chr1:151481565..151487481,13	MCF-7	breast:
10	chr1:151481758..151484470-chr1:151811083..151813836,2	MCF-7	breast:
11	chr1:151483462..151487382-chr1:151518217..151524477,9	MCF-7	breast:
12	chr1:151414651..151422317-chr1:151482271..151486624,12	MCF-7	breast:
13	chr1:151170179..151172284-chr1:151482238..151485195,2	MCF-7	breast:
14	chr1:151427202..151436068-chr1:151477865..151490153,60	MCF-7	breast:
15	chr1:151483888..151486262-chr1:151734424..151737312,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143450	Chromatin interaction
ENSG00000207606	Chromatin interaction
ENSG00000143375	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000163191	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000238711	Chromatin interaction
ENSG00000252840	Chromatin interaction
ENSG00000143398	Chromatin interaction
ENSG00000143442	Chromatin interaction
ENSG00000225556	Chromatin interaction
ENSG00000143436	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10749663	0.87[AMR][1000 genomes]
rs10749664	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10888420	0.87[AMR][1000 genomes]
rs1342928	0.85[AMR][1000 genomes]
rs4970959	0.85[AMR][1000 genomes]
rs6587599	0.87[AMR][1000 genomes]
rs6587600	0.85[AMR][1000 genomes]
rs7533032	0.87[AMR][1000 genomes]
rs7540498	0.87[AMR][1000 genomes]
rs9661205	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151482000-151484200	Active TSS	Duodenum Mucosa	Duodenum
2	chr1:151482400-151485000	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr1:151482400-151486200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr1:151482600-151484000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:151482600-151484200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr1:151482600-151484400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:151482600-151484400	Active TSS	Fetal Brain Female	brain
8	chr1:151482600-151485000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr1:151482800-151484200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:151482800-151484200	Active TSS	Colonic Mucosa	Colon
11	chr1:151482800-151484600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:151482800-151484800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr1:151482800-151485000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:151482800-151485000	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr1:151482800-151486000	Active TSS	Rectal Smooth Muscle	rectum
16	chr1:151483000-151484000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:151483000-151484000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:151483000-151484000	Active TSS	Stomach Smooth Muscle	stomach
19	chr1:151483000-151484000	Active TSS	Hela-S3	cervix
20	chr1:151483000-151484200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:151483000-151484200	Active TSS	Brain Anterior Caudate	brain
22	chr1:151483000-151484400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:151483000-151484400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:151483000-151484400	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr1:151483000-151484400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:151483000-151484400	Active TSS	Brain Angular Gyrus	brain
27	chr1:151483000-151484400	Active TSS	Brain Hippocampus Middle	brain
28	chr1:151483000-151484400	Active TSS	Brain Substantia Nigra	brain
29	chr1:151483000-151484400	Active TSS	NHLF	lung
30	chr1:151483000-151484600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr1:151483000-151484800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:151483000-151485000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:151483200-151484000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:151483200-151484000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
35	chr1:151483200-151484000	Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr1:151483200-151484200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:151483200-151484200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr1:151483200-151484200	Active TSS	Aorta	Aorta
39	chr1:151483200-151484200	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr1:151483200-151484200	Active TSS	Fetal Kidney	kidney
41	chr1:151483200-151484200	Active TSS	Ovary	ovary
42	chr1:151483200-151484200	Active TSS	Right Ventricle	heart
43	chr1:151483200-151484200	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr1:151483200-151484200	Active TSS	Thymus	Thymus
45	chr1:151483200-151484200	Active TSS	HSMMtube	muscle
46	chr1:151483200-151484200	Bivalent/Poised TSS	NHDF-Ad	bronchial
47	chr1:151483200-151484400	Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr1:151483200-151484400	Active TSS	A549	lung
49	chr1:151483200-151484600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr1:151483200-151484600	Active TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links