Variant report

Variant	rs7540498
Chromosome Location	chr1:151479415-151479416
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000232536	Chromatin interaction
ENSG00000143375	Chromatin interaction
ENSG00000143442	Chromatin interaction
ENSG00000143367	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10749663	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10888420	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2337361	0.87[AMR][1000 genomes]
rs6587599	1.00[AMR][1000 genomes]
rs7516311	0.87[AMR][1000 genomes]
rs7533032	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151468400-151482400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:151468600-151482400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:151470200-151482400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:151475400-151481600	Weak transcription	Stomach Mucosa	stomach
5	chr1:151475400-151481800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:151475400-151483400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:151475800-151482000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:151475800-151482800	Weak transcription	Hela-S3	cervix
9	chr1:151475800-151483200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:151476000-151481800	Weak transcription	Colonic Mucosa	Colon
11	chr1:151476600-151481400	Weak transcription	Fetal Intestine Small	intestine
12	chr1:151477000-151481400	Weak transcription	Fetal Intestine Large	intestine
13	chr1:151477200-151482600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:151477200-151483200	Weak transcription	HMEC	breast
15	chr1:151477400-151481400	Weak transcription	A549	lung
16	chr1:151477400-151482800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:151477400-151482800	Weak transcription	NHEK	skin
18	chr1:151477400-151483200	Weak transcription	Small Intestine	intestine
19	chr1:151477600-151482800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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