Variant report

Variant	rs7520187
Chromosome Location	chr1:77695317-77695318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11162294	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006887	chr1:77566348-77698128	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv520629	chr1:77584846-77695854	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv525188	chr1:77655651-77695854	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77685800-77695600	Weak transcription	Left Ventricle	heart
2	chr1:77686000-77699200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:77686600-77698200	Weak transcription	Brain Angular Gyrus	brain
4	chr1:77686800-77698000	Weak transcription	HUVEC	blood vessel
5	chr1:77687000-77695400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:77688400-77697600	Weak transcription	Primary T cells from cord blood	blood
7	chr1:77690800-77695400	Weak transcription	HSMM	muscle
8	chr1:77693000-77695600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:77693800-77697600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:77694600-77696800	Enhancers	A549	lung
11	chr1:77695200-77695800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:77695200-77696000	Enhancers	NHDF-Ad	bronchial
13	chr1:77695200-77696600	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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