Variant report

Variant	rs7520374
Chromosome Location	chr1:186620245-186620246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10737269	0.83[ASN][1000 genomes]
rs10752973	0.83[ASN][1000 genomes]
rs10752974	0.83[ASN][1000 genomes]
rs10798057	0.83[ASN][1000 genomes]
rs10911922	0.83[ASN][1000 genomes]
rs11567835	0.82[EUR][1000 genomes]
rs11567836	0.82[EUR][1000 genomes]
rs1158042	0.83[ASN][1000 genomes]
rs1158043	0.83[ASN][1000 genomes]
rs12029765	0.83[ASN][1000 genomes]
rs12239324	0.83[ASN][1000 genomes]
rs13376484	0.88[EUR][1000 genomes]
rs16825688	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980454	0.83[ASN][1000 genomes]
rs2205951	0.83[ASN][1000 genomes]
rs2223329	0.83[ASN][1000 genomes]
rs4648282	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648284	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648298	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4648311	0.82[EUR][1000 genomes]
rs56294639	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs56337220	0.83[ASN][1000 genomes]
rs59638687	0.88[EUR][1000 genomes]
rs61403154	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61516014	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425049	0.83[ASN][1000 genomes]
rs6660635	0.83[ASN][1000 genomes]
rs6661312	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6663605	0.83[ASN][1000 genomes]
rs6692679	0.83[ASN][1000 genomes]
rs6696144	0.83[ASN][1000 genomes]
rs689462	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs689468	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689469	0.82[EUR][1000 genomes]
rs689470	1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74134715	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs74134717	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74134719	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs74134721	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs74134723	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs74134991	0.83[ASN][1000 genomes]
rs74134997	0.83[ASN][1000 genomes]
rs7418312	0.83[ASN][1000 genomes]
rs7516460	0.83[ASN][1000 genomes]
rs7532307	0.83[ASN][1000 genomes]
rs7554410	0.83[ASN][1000 genomes]
rs7555275	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv832059	chr1:186464932-186639125	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2762854	chr1:186547101-186847574	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186620200-186620400	Enhancers	Duodenum Smooth Muscle	Duodenum
2	chr1:186620200-186626600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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