Variant report

Variant	rs11567835
Chromosome Location	chr1:186639718-186639719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:186631541..186633965-chr1:186639110..186642101,3	MCF-7	breast:
2	chr1:186638420..186641354-chr1:186642011..186644498,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10798055	1.00[ASN][1000 genomes]
rs11567836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116711	1.00[ASN][1000 genomes]
rs12117451	1.00[ASN][1000 genomes]
rs12119919	1.00[ASN][1000 genomes]
rs12144220	1.00[ASN][1000 genomes]
rs12720491	1.00[ASN][1000 genomes]
rs13376484	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825688	0.93[EUR][1000 genomes]
rs4648282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4648284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4648298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650701	1.00[ASN][1000 genomes]
rs59638687	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59873426	1.00[ASN][1000 genomes]
rs61516014	0.93[EUR][1000 genomes]
rs689462	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs689469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689470	0.93[EUR][1000 genomes]
rs74134717	0.93[EUR][1000 genomes]
rs7520374	0.82[EUR][1000 genomes]
rs7523981	1.00[ASN][1000 genomes]
rs766400	1.00[ASN][1000 genomes]
rs964570	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv2762854	chr1:186547101-186847574	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186630400-186640200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:186632600-186640200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:186632800-186640200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:186632800-186641400	Weak transcription	HUVEC	blood vessel
5	chr1:186632800-186642000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:186632800-186649000	Weak transcription	Fetal Lung	lung
7	chr1:186633000-186642200	Weak transcription	HMEC	breast
8	chr1:186633200-186642800	Weak transcription	NHEK	skin
9	chr1:186633200-186643600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:186633800-186640800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:186637600-186641400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:186638200-186641400	Weak transcription	NH-A	brain
13	chr1:186638400-186641800	Weak transcription	Hela-S3	cervix
14	chr1:186638600-186642200	Weak transcription	A549	lung
15	chr1:186639000-186641400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:186639000-186642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:186639000-186643600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:186639200-186640200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:186639200-186641400	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:186639400-186645000	Weak transcription	NHDF-Ad	bronchial
21	chr1:186639400-186648400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr1:186639600-186644600	Weak transcription	Small Intestine	intestine

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