Variant report

Variant	rs7523735
Chromosome Location	chr1:221064780-221064781
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221059069..221061749-chr1:221063321..221065597,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2784255	0.89[ASN][1000 genomes]
rs2807859	0.88[ASN][1000 genomes]
rs6680690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7542375	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1798350	chr1:221020278-221069740	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221062000-221065600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:221062200-221066200	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:221064000-221065000	Bivalent Enhancer	Adipose Nuclei	Adipose
4	chr1:221064000-221067000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
5	chr1:221064200-221065000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr1:221064200-221065200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
7	chr1:221064200-221065600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:221064400-221064800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr1:221064400-221064800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr1:221064400-221064800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:221064400-221065400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
12	chr1:221064400-221065400	Bivalent Enhancer	HUVEC	blood vessel
13	chr1:221064400-221065600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:221064400-221065600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr1:221064400-221067600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:221064600-221064800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:221064600-221064800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:221064600-221064800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
19	chr1:221064600-221064800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr1:221064600-221064800	Bivalent Enhancer	Aorta	Aorta
21	chr1:221064600-221064800	Bivalent Enhancer	Fetal Heart	heart
22	chr1:221064600-221064800	Bivalent Enhancer	Placenta	Placenta
23	chr1:221064600-221065000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:221064600-221065000	Bivalent Enhancer	Fetal Lung	lung
25	chr1:221064600-221065200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
26	chr1:221064600-221065400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
27	chr1:221064600-221065400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
28	chr1:221064600-221065400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:221064600-221065400	Bivalent Enhancer	Brain Hippocampus Middle	brain
30	chr1:221064600-221065400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
31	chr1:221064600-221065600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
32	chr1:221064600-221065600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
33	chr1:221064600-221065600	Enhancers	Pancreas	Pancrea
34	chr1:221064600-221065600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
35	chr1:221064600-221065600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
36	chr1:221064600-221065600	ZNF genes & repeats	Spleen	Spleen
37	chr1:221064600-221065800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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