Variant report

Variant	rs752485
Chromosome Location	chr6:165342467-165342468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12177583	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12182160	0.82[AMR][1000 genomes]
rs12528995	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2093439	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2093442	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4385288	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6910737	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9457026	0.84[AMR][1000 genomes]
rs9459253	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9459254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9459269	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9459277	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3323305	chr6:165342462-165347460	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165333200-165346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:165339600-165342800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:165340800-165344000	Active TSS	Brain Anterior Caudate	brain
4	chr6:165341200-165342600	Active TSS	Brain Germinal Matrix	brain
5	chr6:165341200-165342600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr6:165341200-165342800	Active TSS	Brain Angular Gyrus	brain
7	chr6:165341200-165342800	Active TSS	Brain Hippocampus Middle	brain
8	chr6:165341200-165343000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:165341200-165343200	Active TSS	Fetal Brain Female	brain
10	chr6:165341600-165343200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:165341600-165343200	Active TSS	Brain Substantia Nigra	brain
12	chr6:165341800-165343400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr6:165342200-165342800	Enhancers	Fetal Muscle Trunk	muscle
14	chr6:165342200-165343000	Enhancers	HSMM	muscle
15	chr6:165342200-165343200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:165342200-165343400	Enhancers	Fetal Muscle Leg	muscle
17	chr6:165342400-165342600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:165342400-165342600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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