Variant report

Variant	rs9459277
Chromosome Location	chr6:165410311-165410312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12177583	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12528995	0.84[ASN][1000 genomes]
rs2093439	0.85[AMR][1000 genomes]
rs376580	0.84[AMR][1000 genomes]
rs415222	0.81[AMR][1000 genomes]
rs4385288	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6910737	0.84[ASN][1000 genomes]
rs752485	0.83[AMR][1000 genomes]
rs9457026	0.83[AMR][1000 genomes]
rs9459253	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9459254	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9459269	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9459281	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886926	chr6:165358270-165478051	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3410145	chr6:165395590-165416763	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv13480	chr6:165406753-165416511	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165410200-165410600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links