Variant report

Variant	rs7524877
Chromosome Location	chr1:78615645-78615646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1022103	0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1039865	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10873966	0.86[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs11162415	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162417	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11162425	0.94[ASN][1000 genomes]
rs11162429	0.93[ASN][1000 genomes]
rs11579434	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12095545	0.94[ASN][1000 genomes]
rs12126871	0.81[EUR][1000 genomes]
rs12133075	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12184300	0.94[ASN][1000 genomes]
rs12758374	0.86[ASW][hapmap];0.92[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.90[ASN][1000 genomes]
rs1323094	0.93[ASN][1000 genomes]
rs1890850	0.93[ASN][1000 genomes]
rs2025612	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2025613	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2025614	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2146612	0.96[ASN][1000 genomes]
rs2208966	0.94[ASN][1000 genomes]
rs4650382	0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4650619	0.83[ASN][1000 genomes]
rs4650620	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs60588097	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs616518	0.93[ASN][1000 genomes]
rs638232	0.89[ASN][1000 genomes]
rs640124	0.93[ASN][1000 genomes]
rs653899	0.93[ASN][1000 genomes]
rs689374	0.86[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv1850497	chr1:78596312-78645701	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78584200-78630600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:78609000-78618000	Weak transcription	Colonic Mucosa	Colon
3	chr1:78609200-78624600	Weak transcription	Pancreas	Pancrea
4	chr1:78609200-78624800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:78609400-78619000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:78609600-78620800	Weak transcription	Fetal Intestine Large	intestine
7	chr1:78611600-78631400	Weak transcription	Liver	Liver
8	chr1:78613000-78619000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links