Variant report

Variant	rs12095545
Chromosome Location	chr1:78631294-78631295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1022103	0.87[ASN][1000 genomes]
rs10873966	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162415	0.94[ASN][1000 genomes]
rs11162417	0.89[ASN][1000 genomes]
rs11162418	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11162420	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11162421	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11162423	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11162425	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162429	0.99[ASN][1000 genomes]
rs11579434	0.94[ASN][1000 genomes]
rs12083265	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12131414	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12184300	1.00[ASN][1000 genomes]
rs12749252	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12758374	0.87[ASN][1000 genomes]
rs1323094	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1359043	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1621088	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1770303	0.85[EUR][1000 genomes]
rs1770306	0.84[EUR][1000 genomes]
rs1770311	0.86[EUR][1000 genomes]
rs1890850	0.99[ASN][1000 genomes]
rs2025610	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2025611	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2146612	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2208966	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209472	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2351907	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2351909	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2351910	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2882796	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2882797	0.86[AMR][1000 genomes]
rs2882798	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4258183	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4268312	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4396076	0.82[AMR][1000 genomes]
rs4529663	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4587522	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4650313	0.82[EUR][1000 genomes]
rs4650315	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4650382	0.94[ASN][1000 genomes]
rs4650619	0.89[ASN][1000 genomes]
rs4650620	0.88[ASN][1000 genomes]
rs581926	0.84[EUR][1000 genomes]
rs58611517	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs593113	0.84[EUR][1000 genomes]
rs596803	0.83[EUR][1000 genomes]
rs599386	0.84[EUR][1000 genomes]
rs600237	0.87[EUR][1000 genomes]
rs616518	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61777350	0.82[EUR][1000 genomes]
rs627493	0.84[EUR][1000 genomes]
rs627549	0.84[EUR][1000 genomes]
rs638232	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs640124	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6424716	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6424717	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs649502	0.82[EUR][1000 genomes]
rs653899	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs658377	0.85[EUR][1000 genomes]
rs669357	0.85[EUR][1000 genomes]
rs669764	0.85[EUR][1000 genomes]
rs671229	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs672620	0.86[EUR][1000 genomes]
rs680143	0.82[EUR][1000 genomes]
rs688570	0.84[EUR][1000 genomes]
rs689374	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72688712	0.83[EUR][1000 genomes]
rs7417073	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7524877	0.94[ASN][1000 genomes]
rs7532752	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7555504	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv1850497	chr1:78596312-78645701	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78611600-78631400	Weak transcription	Liver	Liver
2	chr1:78623600-78634000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:78625200-78636600	Weak transcription	Fetal Intestine Large	intestine
4	chr1:78625200-78644400	Weak transcription	Pancreas	Pancrea
5	chr1:78625400-78634400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:78625800-78635600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:78630600-78632000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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