Variant report

Variant	rs7524977
Chromosome Location	chr1:160601821-160601822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160595017..160597618-chr1:160601795..160605267,3	K562	blood:
2	chr1:160594429..160596517-chr1:160600797..160603295,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12021693	1.00[AMR][1000 genomes]
rs12025852	1.00[AMR][1000 genomes]
rs12028187	1.00[AMR][1000 genomes]
rs12034811	1.00[AMR][1000 genomes]
rs12036361	1.00[AMR][1000 genomes]
rs3737780	1.00[AMR][1000 genomes]
rs41266921	1.00[AMR][1000 genomes]
rs41310140	1.00[AMR][1000 genomes]
rs6664149	0.83[EUR][1000 genomes]
rs7519513	1.00[AMR][1000 genomes]
rs7528607	1.00[AMR][1000 genomes]
rs7538770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160591800-160605200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr1:160595400-160611000	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr1:160596800-160604000	Weak transcription	Lung	lung
4	chr1:160596800-160608400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:160597400-160602400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:160598000-160605200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:160599000-160612200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:160599800-160603200	Genic enhancers	Primary B cells from cord blood	blood
9	chr1:160599800-160603400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:160599800-160607600	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr1:160599800-160607600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:160600000-160602400	Enhancers	Small Intestine	intestine
13	chr1:160600000-160603600	Enhancers	Dnd41	blood
14	chr1:160600000-160604400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:160600200-160602200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:160600200-160603800	Transcr. at gene 5' and 3'	Thymus	Thymus
17	chr1:160600200-160604400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:160600200-160608000	Genic enhancers	Fetal Thymus	thymus
19	chr1:160600400-160602000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:160600400-160602800	Weak transcription	Spleen	Spleen
21	chr1:160600400-160607600	Genic enhancers	Primary T cells from cord blood	blood
22	chr1:160600600-160606200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:160600600-160606800	Genic enhancers	GM12878-XiMat	blood
24	chr1:160600800-160602800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:160600800-160606000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:160600800-160607400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr1:160601000-160602400	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr1:160601000-160605800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:160601000-160607600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr1:160601200-160602000	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr1:160601200-160602000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:160601400-160602800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:160601400-160605800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr1:160601600-160605600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:160601800-160602200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr1:160601800-160602400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:160601800-160602400	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr1:160601800-160602400	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr1:160601800-160602800	Weak transcription	Placenta	Placenta

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