Variant report

Variant	rs7528347
Chromosome Location	chr1:73776727-73776728
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10518424	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11210253	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11804961	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12121257	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12122713	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12122747	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12124740	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12126028	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12126048	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12126645	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12127373	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12128002	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12129139	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12129351	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12129496	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12130189	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12131271	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12133609	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12134765	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12134933	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12139989	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12140132	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12145235	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17512311	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17568889	0.98[EUR][1000 genomes]
rs17571591	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17571689	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17571745	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28565938	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55811030	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs582773	0.87[EUR][1000 genomes]
rs59126753	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74091630	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74091667	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74091844	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74093919	0.86[AMR][1000 genomes]
rs74093920	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74093921	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74093923	0.82[EUR][1000 genomes]
rs7526312	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7526580	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7535708	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7537989	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7545661	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7546663	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870886	chr1:73634013-73790683	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv871554	chr1:73647909-73882880	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv870536	chr1:73647909-74031554	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010261	chr1:73652576-73777335	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	esv2764157	chr1:73652588-73778100	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
7	nsv871642	chr1:73665844-73790683	Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
8	esv2762152	chr1:73711328-73777347	Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	nsv461962	chr1:73742019-73910055	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv546572	chr1:73742019-73910055	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv432376	chr1:73758117-73816564	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
12	esv3362771	chr1:73771980-73805147	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73776200-73777000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:73776400-73776800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr1:73776400-73776800	Enhancers	Ovary	ovary
4	chr1:73776400-73777000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:73776400-73777200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:73776600-73777000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:73776600-73777000	Enhancers	Fetal Heart	heart
8	chr1:73776600-73777200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:73776600-73777200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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