Variant report

Variant	rs17568889
Chromosome Location	chr1:73847888-73847889
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10518424	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11210253	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11804961	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12121257	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12122713	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12122747	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12124740	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12126028	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12126048	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12126645	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12127373	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12128002	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12129139	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12129351	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12129496	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12130189	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12131271	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12133609	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12134765	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12134933	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12139822	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12139989	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12140132	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12145235	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17512311	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17571591	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17571689	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17571745	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28565938	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55811030	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs582773	0.89[EUR][1000 genomes]
rs59126753	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59403678	0.82[AMR][1000 genomes]
rs72958316	0.97[AFR][1000 genomes]
rs74091630	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74091667	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74091844	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74093919	0.82[AMR][1000 genomes]
rs74093920	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74093921	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74093923	0.84[EUR][1000 genomes]
rs74094852	0.82[AMR][1000 genomes]
rs7526312	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7526580	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7528347	0.98[EUR][1000 genomes]
rs7535708	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7537989	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7545661	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7546663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv871554	chr1:73647909-73882880	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv870536	chr1:73647909-74031554	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv461962	chr1:73742019-73910055	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv546572	chr1:73742019-73910055	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1012862	chr1:73806210-73898030	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73847400-73849400	Enhancers	Fetal Intestine Small	intestine

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