Variant report

Variant	rs12139822
Chromosome Location	chr1:74010677-74010678
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10518424	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11210253	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11804961	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12121257	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12122713	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12122747	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12124740	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12126028	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12126048	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12126645	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12127373	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12128002	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12129139	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12129351	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12129496	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12130189	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12131271	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12133609	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12134765	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12134933	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12135137	0.84[EUR][1000 genomes]
rs12139989	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12140132	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12145235	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17512311	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17568889	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17571591	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17571689	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17571745	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1909068	0.84[EUR][1000 genomes]
rs28565938	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55811030	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs582773	0.93[EUR][1000 genomes]
rs59126753	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59403678	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6687434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74091630	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74091667	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74091844	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74093079	0.84[EUR][1000 genomes]
rs74093919	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74093920	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74093921	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74093923	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74094852	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7526312	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7526580	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7535708	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7537989	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7545661	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7546663	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870536	chr1:73647909-74031554	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830226	chr1:73950139-74125303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74010600-74010800	Enhancers	HUES64 Cell Line	embryonic stem cell

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