Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:74107568..74110277-chr1:74120867..74122777,2	K562	blood:
2	chr1:74098550..74101436-chr1:74121744..74123511,2	K562	blood:

Variant related genes	Relation type
ENSG00000223479	Chromatin interaction

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10518424	0.82[EUR][1000 genomes]
rs12121257	0.82[EUR][1000 genomes]
rs12122713	0.82[EUR][1000 genomes]
rs12122747	0.81[EUR][1000 genomes]
rs12124740	0.82[EUR][1000 genomes]
rs12126028	0.82[EUR][1000 genomes]
rs12126048	0.82[EUR][1000 genomes]
rs12126645	0.82[EUR][1000 genomes]
rs12127373	0.82[EUR][1000 genomes]
rs12129139	0.82[EUR][1000 genomes]
rs12129351	0.82[EUR][1000 genomes]
rs12129496	0.82[EUR][1000 genomes]
rs12130189	0.82[EUR][1000 genomes]
rs12131271	0.82[EUR][1000 genomes]
rs12133609	0.81[EUR][1000 genomes]
rs12134765	0.82[EUR][1000 genomes]
rs12134933	0.82[EUR][1000 genomes]
rs12139822	0.84[EUR][1000 genomes]
rs12139989	0.80[EUR][1000 genomes]
rs12140132	0.82[EUR][1000 genomes]
rs17512311	0.82[EUR][1000 genomes]
rs17571591	0.82[EUR][1000 genomes]
rs17571689	0.82[EUR][1000 genomes]
rs17571745	0.82[EUR][1000 genomes]
rs1909068	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28565938	0.82[EUR][1000 genomes]
rs55811030	0.82[EUR][1000 genomes]
rs59126753	0.82[EUR][1000 genomes]
rs59403678	0.89[EUR][1000 genomes]
rs6687434	0.91[EUR][1000 genomes]
rs74091667	0.82[EUR][1000 genomes]
rs74093079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093921	0.82[EUR][1000 genomes]
rs74093923	0.82[EUR][1000 genomes]
rs74094852	0.89[EUR][1000 genomes]
rs7526312	0.82[EUR][1000 genomes]
rs7526580	0.82[EUR][1000 genomes]
rs7535708	0.82[EUR][1000 genomes]
rs7537989	0.82[EUR][1000 genomes]
rs7545661	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830226	chr1:73950139-74125303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1004451	chr1:74107125-74874389	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv534999	chr1:74107125-74874389	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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