Variant report

Variant	rs59403678
Chromosome Location	chr1:74030818-74030819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10518424	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11210253	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11804961	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12121257	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12122713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12122747	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12124740	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12126028	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12126048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12126645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12127373	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12128002	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12129139	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12129351	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12129496	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12130189	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12131271	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12133609	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12134765	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12134933	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12135137	0.89[EUR][1000 genomes]
rs12139822	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12139989	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12140132	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12145235	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17512311	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17568889	0.82[AMR][1000 genomes]
rs17571591	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17571689	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17571745	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1909068	0.89[EUR][1000 genomes]
rs28565938	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55811030	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs582773	0.89[EUR][1000 genomes]
rs59126753	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6687434	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74091630	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74091667	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74091844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74093079	0.89[EUR][1000 genomes]
rs74093919	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74093920	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74093921	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74093923	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74094852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7526312	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7526580	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7535708	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7537989	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7545661	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7546663	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870536	chr1:73647909-74031554	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830226	chr1:73950139-74125303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74030000-74031000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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