Variant report

Variant	rs7529805
Chromosome Location	chr1:166353138-166353139
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16856676	1.00[AMR][1000 genomes]
rs16856694	1.00[AMR][1000 genomes]
rs58359448	1.00[AMR][1000 genomes]
rs59283985	1.00[AMR][1000 genomes]
rs73032914	1.00[AMR][1000 genomes]
rs7531693	1.00[AMR][1000 genomes]
rs7531868	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166343800-166354200	Weak transcription	Right Atrium	heart
2	chr1:166348200-166354200	Weak transcription	Left Ventricle	heart
3	chr1:166349400-166354200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:166352000-166353400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:166352000-166360200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:166352200-166356000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr1:166352400-166353200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr1:166352600-166353200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:166352600-166353600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:166352600-166354600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:166352800-166353200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr1:166352800-166356200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:166353000-166353200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr1:166353000-166353200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr1:166353000-166353400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr1:166353000-166354400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr1:166353000-166356200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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