Variant report
| Variant | rs7531693 |
|---|---|
| Chromosome Location | chr1:166308370-166308371 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-UCK2-3 | chr1:166308137-166308626 | XLOC_000451 |
| 2 | lnc-UCK2-3 | chr1:166308136-166308626 | NONHSAT007356 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10494454 | 1.00[AMR][1000 genomes] |
| rs16856607 | 1.00[AMR][1000 genomes] |
| rs16856617 | 1.00[AMR][1000 genomes] |
| rs16856657 | 1.00[AMR][1000 genomes] |
| rs16856676 | 1.00[AMR][1000 genomes] |
| rs16856694 | 1.00[AMR][1000 genomes] |
| rs58359448 | 1.00[AMR][1000 genomes] |
| rs6677013 | 1.00[AMR][1000 genomes] |
| rs7529805 | 1.00[AMR][1000 genomes] |
| rs7531868 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
