Variant report

Variant	rs16856607
Chromosome Location	chr1:166109711-166109712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10436882	1.00[MEX][hapmap]
rs10494454	1.00[AMR][1000 genomes]
rs10800192	0.89[YRI][hapmap]
rs12062293	1.00[MEX][hapmap]
rs12081735	1.00[MEX][hapmap]
rs16855520	1.00[MEX][hapmap]
rs16856617	1.00[AMR][1000 genomes]
rs16856657	1.00[AMR][1000 genomes]
rs16856676	0.83[LWK][hapmap];1.00[AMR][1000 genomes]
rs16856694	0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6677013	0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7531693	1.00[AMR][1000 genomes]
rs7531868	1.00[AMR][1000 genomes]
rs7541280	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166083000-166110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:166106200-166112400	Weak transcription	Psoas Muscle	Psoas
3	chr1:166106200-166119000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:166106600-166123200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:166109200-166110000	Enhancers	Rectal Smooth Muscle	rectum
6	chr1:166109200-166119000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:166109400-166114600	Weak transcription	Spleen	Spleen
8	chr1:166109600-166110000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:166109600-166111200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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