Variant report

Variant	rs16855520
Chromosome Location	chr1:166011302-166011303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10436882	1.00[MEX][hapmap]
rs12062293	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs12081735	1.00[MEX][hapmap]
rs16855485	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16856607	1.00[MEX][hapmap]
rs16856694	1.00[MEX][hapmap]
rs6663577	1.00[AMR][1000 genomes]
rs6677013	1.00[MEX][hapmap]
rs73024148	1.00[AMR][1000 genomes]
rs73024157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024171	0.85[AMR][1000 genomes]
rs73024183	0.85[AMR][1000 genomes]
rs73024878	0.87[AMR][1000 genomes]
rs73024881	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541280	1.00[MEX][hapmap]
rs9427134	0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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